; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005927 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005927
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionElongin-C
Genome locationscaffold11:1654000..1655638
RNA-Seq ExpressionSpg005927
SyntenySpg005927
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
InterPro domainsIPR001232 - S-phase kinase-associated protein 1-like
IPR011333 - SKP1/BTB/POZ domain superfamily
IPR016073 - SKP1 component, POZ domain
IPR039948 - Elongin-C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]3.1e-3860.76Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]1.4e-3861.39Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

XP_022948640.1 elongin-C-like [Cucurbita moschata]1.5e-3760.13Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYFYW+LQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]8.1e-3961.39Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]3.6e-3962.03Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

TrEMBL top hitse value%identityAlignment
A0A0A0LY44 Elongin-C1.5e-3860.76Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

A0A1S3C6T3 Elongin-C1.5e-3860.76Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

A0A6J1DWE1 Elongin-C6.7e-3961.39Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

A0A6J1HJP6 Elongin-C3.9e-3961.39Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

A0A6J1KFM7 Elongin-C7.4e-3860.13Show/hide
Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYFYW+LQFA                            
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLD

Query:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                        SGKETEFPIEPELTLELMMAANYLHT
Subjt:  RKLQRLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT

SwissProt top hitse value%identityAlignment
P83940 Elongin-C1.1e-1130.67Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++   S              +E P             
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRL

Query:  CTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYL
                                       EFPI PE+ LEL+MAAN+L
Subjt:  CTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYL

P83941 Elongin-C1.1e-1130.67Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++   S              +E P             
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRL

Query:  CTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYL
                                       EFPI PE+ LEL+MAAN+L
Subjt:  CTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYL

Q15369 Elongin-C1.1e-1130.67Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++   S              +E P             
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRL

Query:  CTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYL
                                       EFPI PE+ LEL+MAAN+L
Subjt:  CTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYL

Q2KII4 Elongin-C1.1e-1130.67Show/hide
Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++   S              +E P             
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRL

Query:  CTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYL
                                       EFPI PE+ LEL+MAAN+L
Subjt:  CTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYL

Q9USX9 Elongin-C1.7e-1044.93Show/hide
Query:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF
        ++E V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C+Y ++N ++
Subjt:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF

Arabidopsis top hitse value%identityAlignment
AT5G59140.1 BTB/POZ domain-containing protein3.0e-3150.65Show/hide
Query:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQ
        ETVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQYFYW+LQ++R                               
Subjt:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQ

Query:  RLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT
                                     GKETEF IEPELTLELMMAANYLHT
Subjt:  RLCTSSFSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCGTGATCCACAAGGATGCTGCCATGGTTTCTCAGACGATTCGAAACATGCTTACTTCGCC
AGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATATGCCAATATTTTTACTGGAATCTTCAATTCGCCAGGT
TTTCATTTCTTTTTTATATTCTTTTAGGGAAAAAAGAAGGGAAGTTTTCTGAGAAGCCAGATAGAATATATGGTCTGGATAGAAAACTGCAGCGCTTGTGTACCTCTTCA
TTCTCTTTGGTTCTTGTTTCATTCTTGAACTCTGTTGTCACGGACGTTGATTTCTTCCTTTTTGTCAGTGGGAAAGAGACCGAGTTCCCAATTGAACCTGAATTGACTCT
TGAGTTGATGATGGCTGCCAACTATCTCCATACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCGTGATCCACAAGGATGCTGCCATGGTTTCTCAGACGATTCGAAACATGCTTACTTCGCC
AGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATATGCCAATATTTTTACTGGAATCTTCAATTCGCCAGGT
TTTCATTTCTTTTTTATATTCTTTTAGGGAAAAAAGAAGGGAAGTTTTCTGAGAAGCCAGATAGAATATATGGTCTGGATAGAAAACTGCAGCGCTTGTGTACCTCTTCA
TTCTCTTTGGTTCTTGTTTCATTCTTGAACTCTGTTGTCACGGACGTTGATTTCTTCCTTTTTGTCAGTGGGAAAGAGACCGAGTTCCCAATTGAACCTGAATTGACTCT
TGAGTTGATGATGGCTGCCAACTATCTCCATACATGA
Protein sequenceShow/hide protein sequence
MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFARFSFLFYILLGKKEGKFSEKPDRIYGLDRKLQRLCTSS
FSLVLVSFLNSVVTDVDFFLFVSGKETEFPIEPELTLELMMAANYLHT