; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005946 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005946
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionStructure-specific endonuclease subunit SLX1 homolog
Genome locationscaffold11:263442..266034
RNA-Seq ExpressionSpg005946
SyntenySpg005946
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0051569 - regulation of histone H3-K4 methylation (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR027520 - Structure-specific endonuclease subunit Slx1
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060004.1 Structure-specific endonuclease subunit SLX1 [Cucumis melo var. makuwa]6.7e-17582.46Show/hide
Query:  EEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR
        EE+ +DDE+EERGN  NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR
Subjt:  EEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR

Query:  SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDWEYNREYEEICSFQVYGS
        SAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLPEHMKVQV PI ELPCYSEGDQ VL NEDDWEY+RE EEICSFQVYGS
Subjt:  SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDWEYNREYEEICSFQVYGS

Query:  MKEVSNEIPQKLMDDQSSTDGTPNE-LQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHIIAGMSGTEIIIEDGEEDQLE
        MKEVSNE+PQKLMD Q+ TDG P   L+GCDKELE NE+VPPSSCTPS  D  MSY+    DE L+NDERE  SC  S  +AG S TEIII+DGEE+Q E
Subjt:  MKEVSNEIPQKLMDDQSSTDGTPNE-LQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHIIAGMSGTEIIIEDGEEDQLE

Query:  GRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL
        G S MNL +QPGR+NLTSG+A+E  K SRC+NG VP VEYEVIDVSTPSPDCRTSS RFKRR+TSG+SE+IDLTKSPTFI+L
Subjt:  GRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL

KAG7019098.1 Structure-specific endonuclease subunit SLX1, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-16777.72Show/hide
Query:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA
        MR+RKEKPEI KTMAVAEE+ EDDEDEERGNE NGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSA
Subjt:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA

Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW
        LQFEWAWQHPNESLAVRSAAATFKSLSG+ANK+KLAYTMLTLPAWCSLNITVNYFSTKYM NAAGCPSLP HM+VQV PI ELPCYSEGD+ VL NEDDW
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW

Query:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMSYERDEELKN-DEREPPSCAPSHIIAGMSG
        EYNREYEE+C  QV+  M EV NEIPQ LMD Q+ TDG P+EL+G D+ELEDNE++P SSCTPS  D  +SY    +L+  DE++P  CA   I+ G   
Subjt:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMSYERDEELKN-DEREPPSCAPSHIIAGMSG

Query:  TEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL
        TEIII+DGEE+ LEG S   L QQPGR+NL SG+ATE    S  + G+PPVE EVIDVSTPSPDCRTSS +FKRR+ +GRSEIIDLTKSPTFI+L
Subjt:  TEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL

XP_004153269.1 structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus]3.2e-17781.45Show/hide
Query:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA
        MRKRKEKPEI KT    +EE EDDE+EERGNE NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA
Subjt:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA

Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW
        LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK+MKNAAGCPSLPEHMKVQV PI+ELPCYSEGDQ +L NE DW
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW

Query:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDG-TPNELQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHIIAG
        EYNRE EEIC F+VYGSMKEVSNE+PQKLMD Q+ TDG  P+ L+GCDKELE NE+VPPSSCTPS  D  MSY+    DE L+NDERE  SC  S I+AG
Subjt:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDG-TPNELQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHIIAG

Query:  MSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL
         S TEI+I+D EE+QLEG S MNL +QPGR NLTSG+A+E  K SR NNG VP VEYEVIDVSTPSPDCRTSS RFKRR+TSG+SE+IDLTKSPTFI+L
Subjt:  MSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL

XP_008457313.1 PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]1.4e-18081.84Show/hide
Query:  MRKRKEKPEISKTMAVA---EEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKEKPEI KTMA     EE+ +DDE+EERGN  NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKPEISKTMAVA---EEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLPEHMKVQV PI ELPCYSEGDQ VL NE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNE

Query:  DDWEYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNE-LQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHI
        DDWEY+RE EEICSFQVYGSMKEVSNE+PQKLMD Q+ TDG P   L+GCDKELE NE+VPPSSCTPS  D  MSY+    DE L+NDERE  SC  S  
Subjt:  DDWEYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNE-LQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHI

Query:  IAGMSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFI
        +AG S TEIII+DGEE+Q EG S MNL +QPGR+NLTSG+A+E  K SRC+NG VP VEYEVIDVSTPSPDCRTSS RFKRR+TSG+SE+IDLTKSPTFI
Subjt:  IAGMSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFI

Query:  RL
        +L
Subjt:  RL

XP_038894793.1 structure-specific endonuclease subunit SLX1 [Benincasa hispida]4.9e-18683.25Show/hide
Query:  MRKRKEKPEISKTMAVAEEENEDDEDEER---GNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKE+PEISKTMAVAEEE EDDEDEE     NE NGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKPEISKTMAVAEEENEDDEDEER---GNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLP+HMKVQV PI+ELPCYSEGDQ VL NE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNE

Query:  DDWEYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHII
        DDWEYNRE EEICSF+VYGSMKEVSNE+PQKLMD Q+STDG P EL GCDKE E+NE+VPPSSC PS  DA MSY+    DEEL+ DEREP SCAPS I+
Subjt:  DDWEYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHII

Query:  AGMSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL
          +S TEIII+DG+EDQ+EG + MNL QQ  R+NL+SG+A+E  K SRCN  +PPVEYEVIDVSTPSPDCRT+S R KR++TSGRSEIIDLTKSPTFI+L
Subjt:  AGMSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL

TrEMBL top hitse value%identityAlignment
A0A0A0M0Y6 Structure-specific endonuclease subunit SLX1 homolog1.6e-17781.45Show/hide
Query:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA
        MRKRKEKPEI KT    +EE EDDE+EERGNE NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA
Subjt:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA

Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW
        LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK+MKNAAGCPSLPEHMKVQV PI+ELPCYSEGDQ +L NE DW
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW

Query:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDG-TPNELQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHIIAG
        EYNRE EEIC F+VYGSMKEVSNE+PQKLMD Q+ TDG  P+ L+GCDKELE NE+VPPSSCTPS  D  MSY+    DE L+NDERE  SC  S I+AG
Subjt:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDG-TPNELQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHIIAG

Query:  MSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL
         S TEI+I+D EE+QLEG S MNL +QPGR NLTSG+A+E  K SR NNG VP VEYEVIDVSTPSPDCRTSS RFKRR+TSG+SE+IDLTKSPTFI+L
Subjt:  MSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL

A0A1S3C574 Structure-specific endonuclease subunit SLX1 homolog6.7e-18181.84Show/hide
Query:  MRKRKEKPEISKTMAVA---EEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKEKPEI KTMA     EE+ +DDE+EERGN  NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKPEISKTMAVA---EEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLPEHMKVQV PI ELPCYSEGDQ VL NE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNE

Query:  DDWEYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNE-LQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHI
        DDWEY+RE EEICSFQVYGSMKEVSNE+PQKLMD Q+ TDG P   L+GCDKELE NE+VPPSSCTPS  D  MSY+    DE L+NDERE  SC  S  
Subjt:  DDWEYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNE-LQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHI

Query:  IAGMSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFI
        +AG S TEIII+DGEE+Q EG S MNL +QPGR+NLTSG+A+E  K SRC+NG VP VEYEVIDVSTPSPDCRTSS RFKRR+TSG+SE+IDLTKSPTFI
Subjt:  IAGMSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFI

Query:  RL
        +L
Subjt:  RL

A0A5D3BBR0 Structure-specific endonuclease subunit SLX1 homolog3.2e-17582.46Show/hide
Query:  EEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR
        EE+ +DDE+EERGN  NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR
Subjt:  EEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVR

Query:  SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDWEYNREYEEICSFQVYGS
        SAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLPEHMKVQV PI ELPCYSEGDQ VL NEDDWEY+RE EEICSFQVYGS
Subjt:  SAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDWEYNREYEEICSFQVYGS

Query:  MKEVSNEIPQKLMDDQSSTDGTPNE-LQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHIIAGMSGTEIIIEDGEEDQLE
        MKEVSNE+PQKLMD Q+ TDG P   L+GCDKELE NE+VPPSSCTPS  D  MSY+    DE L+NDERE  SC  S  +AG S TEIII+DGEE+Q E
Subjt:  MKEVSNEIPQKLMDDQSSTDGTPNE-LQGCDKELEDNERVPPSSCTPSDNDADMSYER---DEELKNDEREPPSCAPSHIIAGMSGTEIIIEDGEEDQLE

Query:  GRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL
        G S MNL +QPGR+NLTSG+A+E  K SRC+NG VP VEYEVIDVSTPSPDCRTSS RFKRR+TSG+SE+IDLTKSPTFI+L
Subjt:  GRSDMNLHQQPGRRNLTSGMATERIKDSRCNNG-VPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL

A0A6J1DNH4 Structure-specific endonuclease subunit SLX1 homolog1.4e-16277.44Show/hide
Query:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA
        MRKRKEK EISK M VAEEEN   EDEERGNE+NGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEI CGAWRTKRKRPWEMVLCIYGFPTNVSA
Subjt:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA

Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW
        LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYM NAAGCPSLPEHMKVQV PI +LPCYSEGDQ V  NEDD 
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW

Query:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMSYE---RDEELKNDEREPPSCAPSHIIAGM
        EYNREYEE+CSF+VYGS KEV NEIPQKL D             GCDKELED+ER PPSSC+PS     MS++    ++EL++ +R PPSCAPS+ +AG 
Subjt:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMSYE---RDEELKNDEREPPSCAPSHIIAGM

Query:  SGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSS-QRFKRRLTS-GRSEIIDLTKSPTFIRL
        S TEIIIEDGEEDQ EG + +NL Q+PG  N  S       K  RCN G PP EYEVIDV TPSPDCRTSS  RFKRR+TS   SEIIDLTKSPTFIRL
Subjt:  SGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSS-QRFKRRLTS-GRSEIIDLTKSPTFIRL

A0A6J1I681 Structure-specific endonuclease subunit SLX1 homolog2.5e-15977.13Show/hide
Query:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA
        MR+RKEKPEI KTMAVAEE+ EDDEDEERGNE NGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSA
Subjt:  MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA

Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW
        LQFEWAWQHPNESLAVRSAAATFKSLSG+ANK+KLAYTMLTLPAWCSLNITVNYFSTKYM NAAGCPSLP HM+VQ+ PI ELPCYSEGD+ VL NE+DW
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW

Query:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMSYERDEELKN-DEREPPSCAPSHIIAGMSG
        EYN+EYEE+CS QV+G M EV NEIPQ LMD  + TDG P+EL+G D+EL+DNE+VP SSCTPS  D  +SY    +L+  DE+EP  CA    + G   
Subjt:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQSSTDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMSYERDEELKN-DEREPPSCAPSHIIAGMSG

Query:  TEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRL
        TEIII+DGEE+QLEG S M L QQPGR+   SG+ATE    S+ + G+PPVEYEVIDVSTPSP CRTSS +FKRRL
Subjt:  TEIIIEDGEEDQLEGRSDMNLHQQPGRRNLTSGMATERIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRL

SwissProt top hitse value%identityAlignment
Q0IH86 Structure-specific endonuclease subunit slx11.4e-2641.26Show/hide
Query:  ETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVA
        E  GF+  YLL    P+YKG  YIGFTVNP+RRI+QHN G+ + GAW+T  + PW+MVL ++GFP +++AL+FEWAWQHP+ S  +       K  S   
Subjt:  ETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVA

Query:  NKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHM
          + +   ML +  W  L +T+ +   +Y +        P HM
Subjt:  NKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHM

Q32PI0 Structure-specific endonuclease subunit SLX11.3e-2741.38Show/hide
Query:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR++G  Y+GFTVNP RR++QHN G  + GAWRT  + PWEMVL ++GFP+ V+AL+FEWAWQHP  S  +       +  +  A  ++
Subjt:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCP
        +   ML  P W  L +T+ +    + ++   CP  P HM +   P
Subjt:  LAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCP

Q5PQP5 Structure-specific endonuclease subunit SLX16.8e-2940.12Show/hide
Query:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR++G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL ++GFP+ V+AL+FEWAWQHP  S  +       +S +     ++
Subjt:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCP------ISELPCYSEGD
        +   ML +P W  L +TV +    +      CP+ P HM +   P      + + P  SE D
Subjt:  LAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCP------ISELPCYSEGD

Q8BX32 Structure-specific endonuclease subunit SLX12.3e-2940.74Show/hide
Query:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR++G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL I+GFP+ V+AL+FEWAWQHP  S  +       +S +  A  ++
Subjt:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCP------ISELPCYSEGD
        +   ML +P W  L +T+ +    +      CP+ P HM +   P      + + P  SE D
Subjt:  LAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCP------ISELPCYSEGD

Q9BQ83 Structure-specific endonuclease subunit SLX19.2e-2640Show/hide
Query:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PRY+G  Y+GFTVN  RR++QHN G  + GAWRT  + PWEMVL ++GFP++V+AL+FEWAWQHP+ S  +       +  +  A  ++
Subjt:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCP
        +   ML  P W  L +T+ +      ++   C   P H+ +   P
Subjt:  LAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCP

Arabidopsis top hitse value%identityAlignment
AT2G30350.1 Excinuclease ABC, C subunit, N-terminal3.4e-3638.69Show/hide
Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW
        LQFEWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW SLN+TVNYFS+KY  +    PSLP HMKVQVC + +L  +++ D      +++ 
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDW

Query:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQS--STDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMS---YERDEELKNDEREPPSCAPSHIIA
                           EV+ E      DD S  S  G  N     D+  E   + P +     D  A+ S      +EE   DE        SHI  
Subjt:  EYNREYEEICSFQVYGSMKEVSNEIPQKLMDDQS--STDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMS---YERDEELKNDEREPPSCAPSHIIA

Query:  G-MSGTEIIIEDGEEDQLEGRSDMNLHQ------QPGRRNLTSGMATE-RIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTK
        G +  TE   E    D+L   +   L +        G    T  M  E R + +   +    V+ EVID+ TPSP CR  S   +RR+    SE IDLT 
Subjt:  G-MSGTEIIIEDGEEDQLEGRSDMNLHQ------QPGRRNLTSGMATE-RIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTK

Query:  SPTFI
        SP FI
Subjt:  SPTFI

AT2G30350.2 Excinuclease ABC, C subunit, N-terminal1.1e-7446.46Show/hide
Query:  EDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFK
        ED   G +  GFF+CYLL S  PR+KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRPWEMVLCIYGFPTNVSALQFEWAWQHP ES+AVR AAA FK
Subjt:  EDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFK

Query:  SLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDWEYNREYEEICSFQVYGSMKEVSNE
        S SGVA+K+KL YTML LPAW SLN+TVNYFS+KY  +    PSLP HMKVQVC + +L  +++ D      +++                    EV+ E
Subjt:  SLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDWEYNREYEEICSFQVYGSMKEVSNE

Query:  IPQKLMDDQS--STDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMS---YERDEELKNDEREPPSCAPSHIIAG-MSGTEIIIEDGEEDQLEGRSDM
              DD S  S  G  N     D+  E   + P +     D  A+ S      +EE   DE        SHI  G +  TE   E    D+L   +  
Subjt:  IPQKLMDDQS--STDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMS---YERDEELKNDEREPPSCAPSHIIAG-MSGTEIIIEDGEEDQLEGRSDM

Query:  NLHQ------QPGRRNLTSGMATE-RIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFI
         L +        G    T  M  E R + +   +    V+ EVID+ TPSP CR  S   +RR+    SE IDLT SP FI
Subjt:  NLHQ------QPGRRNLTSGMATE-RIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFI

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal6.8e-0841.67Show/hide
Query:  FSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQ
        +S YL+ S     K  TY+G T +  RR++QHNGEIR GA  +   RPW     I GF     A  FE  W+
Subjt:  FSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGAGGAAAGAGAAGCCAGAAATCTCTAAAACCATGGCTGTTGCAGAAGAAGAGAATGAAGACGATGAAGATGAAGAAAGGGGCAACGAAACGAATGGCTTCTT
TTCATGCTATCTCTTGGCCTCTGCCTGCCCTCGTTACAAAGGCCATACCTATATCGGATTTACAGTGAACCCGAAACGTAGAATCCGGCAGCACAATGGCGAAATTAGAT
GCGGTGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTTTTGTGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTTCAGTTTGAATGGGCCTGGCAGCATCCT
AATGAGTCATTGGCTGTTAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCCAACAAAGTTAAACTTGCATATACAATGCTCACTCTTCCAGCTTGGTGCAG
TTTGAATATCACTGTAAACTACTTCTCAACAAAGTACATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCTGAGCATATGAAGGTCCAAGTTTGCCCCATCAGTGAGCTTC
CATGCTATTCTGAAGGAGATCAAGTTGTACTTGGAAATGAAGATGACTGGGAGTATAATAGAGAATATGAAGAAATTTGTAGTTTTCAAGTATATGGATCAATGAAAGAA
GTTTCAAATGAAATTCCTCAAAAGTTAATGGATGACCAGTCAAGTACAGATGGAACACCTAATGAATTGCAAGGATGCGATAAAGAACTCGAGGACAATGAACGAGTGCC
GCCTTCTTCATGTACTCCATCTGATAATGACGCAGATATGTCTTATGAACGCGATGAAGAACTCAAGAATGATGAACGAGAGCCACCTTCTTGTGCTCCGTCTCATATCA
TAGCAGGTATGTCTGGCACTGAAATCATCATCGAAGATGGAGAGGAAGACCAATTAGAAGGGAGGAGTGATATGAACTTGCATCAACAACCTGGTAGGAGGAATTTAACA
TCAGGAATGGCTACTGAAAGGATCAAAGATTCAAGATGTAACAATGGGGTTCCTCCTGTTGAGTATGAGGTTATAGATGTGTCTACCCCGTCTCCTGACTGCAGAACAAG
TTCGCAAAGATTCAAGAGAAGACTTACTTCTGGTAGGTCTGAGATTATTGACTTGACCAAATCTCCAACCTTTATCCGATTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGAGGAAAGAGAAGCCAGAAATCTCTAAAACCATGGCTGTTGCAGAAGAAGAGAATGAAGACGATGAAGATGAAGAAAGGGGCAACGAAACGAATGGCTTCTT
TTCATGCTATCTCTTGGCCTCTGCCTGCCCTCGTTACAAAGGCCATACCTATATCGGATTTACAGTGAACCCGAAACGTAGAATCCGGCAGCACAATGGCGAAATTAGAT
GCGGTGCGTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTTTTGTGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTTCAGTTTGAATGGGCCTGGCAGCATCCT
AATGAGTCATTGGCTGTTAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCCAACAAAGTTAAACTTGCATATACAATGCTCACTCTTCCAGCTTGGTGCAG
TTTGAATATCACTGTAAACTACTTCTCAACAAAGTACATGAAGAATGCGGCTGGTTGCCCAAGTTTGCCTGAGCATATGAAGGTCCAAGTTTGCCCCATCAGTGAGCTTC
CATGCTATTCTGAAGGAGATCAAGTTGTACTTGGAAATGAAGATGACTGGGAGTATAATAGAGAATATGAAGAAATTTGTAGTTTTCAAGTATATGGATCAATGAAAGAA
GTTTCAAATGAAATTCCTCAAAAGTTAATGGATGACCAGTCAAGTACAGATGGAACACCTAATGAATTGCAAGGATGCGATAAAGAACTCGAGGACAATGAACGAGTGCC
GCCTTCTTCATGTACTCCATCTGATAATGACGCAGATATGTCTTATGAACGCGATGAAGAACTCAAGAATGATGAACGAGAGCCACCTTCTTGTGCTCCGTCTCATATCA
TAGCAGGTATGTCTGGCACTGAAATCATCATCGAAGATGGAGAGGAAGACCAATTAGAAGGGAGGAGTGATATGAACTTGCATCAACAACCTGGTAGGAGGAATTTAACA
TCAGGAATGGCTACTGAAAGGATCAAAGATTCAAGATGTAACAATGGGGTTCCTCCTGTTGAGTATGAGGTTATAGATGTGTCTACCCCGTCTCCTGACTGCAGAACAAG
TTCGCAAAGATTCAAGAGAAGACTTACTTCTGGTAGGTCTGAGATTATTGACTTGACCAAATCTCCAACCTTTATCCGATTATAG
Protein sequenceShow/hide protein sequence
MRKRKEKPEISKTMAVAEEENEDDEDEERGNETNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHP
NESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMKNAAGCPSLPEHMKVQVCPISELPCYSEGDQVVLGNEDDWEYNREYEEICSFQVYGSMKE
VSNEIPQKLMDDQSSTDGTPNELQGCDKELEDNERVPPSSCTPSDNDADMSYERDEELKNDEREPPSCAPSHIIAGMSGTEIIIEDGEEDQLEGRSDMNLHQQPGRRNLT
SGMATERIKDSRCNNGVPPVEYEVIDVSTPSPDCRTSSQRFKRRLTSGRSEIIDLTKSPTFIRL