; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006023 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006023
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold7:31425922..31430144
RNA-Seq ExpressionSpg006023
SyntenySpg006023
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.2e-0673.68Show/hide
Query:  GESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFR
        GESGQ  DSI L   GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.4e-0860.42Show/hide
Query:  ESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFREADESGVMDTR
        ESGQ ADS+ L  WGQDR+ SWEHN TRWNSLLP FRE  +  +++ +
Subjt:  ESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFREADESGVMDTR
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0771.79Show/hide
Query:  GESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFRE
        GESGQ  DSI L  WGQDR+GSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFRE
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein6.5e-0468.97Show/hide
Query:  ISLPLWGQDRIGSWEHNLTRWNSLLPDFR
        + L  WGQD++GSWEHN  RWNSL+PDFR
Subjt:  ISLPLWGQDRIGSWEHNLTRWNSLLPDFR
A0A5A7SPG1 Pol protein1.1e-0673.68Show/hide
Query:  GESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFR
        GESGQ  DSI L   GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein6.7e-0960.42Show/hide
Query:  ESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFREADESGVMDTR
        ESGQ ADS+ L  WGQDR+ SWEHN TRWNSLLP FRE  +  +++ +
Subjt:  ESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFREADESGVMDTR
A0A5D3C3J6 Gag/pol protein5.6e-0871.79Show/hide
Query:  GESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFRE
        GESGQ  DSI L  WGQDR+GSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFRE
A0A5D3E3M6 Uncharacterized protein6.5e-0468.97Show/hide
Query:  ISLPLWGQDRIGSWEHNLTRWNSLLPDFR
        + L  WGQD++GSWEHN  RWNSL+PDFR
Subjt:  ISLPLWGQDRIGSWEHNLTRWNSLLPDFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCACTTTGGGGACAAGACCGAATAGGGAGCTGGGAACATAATCTTACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTATGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTGTCCATTAGGTCCCACTGCGATCAACAGGCGAAGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGTCGCCGCC
AGTCGTGAGCCACGCGTAAGCCTTCGTGCTGCTCCGTCTCGCTGTGTTCGTGTTGTTTCCTTGCGTTCTCAGCTAAGAGGTGTGTTCGCTTTGTTCTGGGTCGTTACAGC
GTCACCTAGCGATTTCGCGCCGTCTAGGTGTTCGTTTGGGTTCGAATCACTTGAGTTCGATCACCCACTACCCAAAGAGCGTTCTAGCACGCTGTTCGGGGTTTGGGATA
ACCTGTCTGGTGTTAAAACGGGTCCTTCGGGTAAGTTTCTTCATTGTCCCTGTCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGCGCAGTTCAAGGCCTTGGGT
AAAAATGGTCAAGGGTCGAATGCCGAACTCCGTAGAGAGCATTGTGGTCCTGGGTACAAATGGTCAGGGGACAGTGCGGCTCGAAGGGTCAGTCTTGGAGAGCTTTATGA
AGGCTATGAGAAATTGAAGTCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGCACAGTTCGAGGACTTGGGTGTGAGCCACTTACTCAGTACCGCTGTATTGTAC
TGATCCACCACCAGATTTTTGCAGGTTATGAGACCATATCTGGACTTGGTGATGAGGAGGAGGCTTGGAAGAGGAGACCATTAGATAGTAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCACTTTGGGGACAAGACCGAATAGGGAGCTGGGAACATAATCTTACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTATGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTGTCCATTAGGTCCCACTGCGATCAACAGGCGAAGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTTGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGTCGCCGCC
AGTCGTGAGCCACGCGTAAGCCTTCGTGCTGCTCCGTCTCGCTGTGTTCGTGTTGTTTCCTTGCGTTCTCAGCTAAGAGGTGTGTTCGCTTTGTTCTGGGTCGTTACAGC
GTCACCTAGCGATTTCGCGCCGTCTAGGTGTTCGTTTGGGTTCGAATCACTTGAGTTCGATCACCCACTACCCAAAGAGCGTTCTAGCACGCTGTTCGGGGTTTGGGATA
ACCTGTCTGGTGTTAAAACGGGTCCTTCGGGTAAGTTTCTTCATTGTCCCTGTCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGCGCAGTTCAAGGCCTTGGGT
AAAAATGGTCAAGGGTCGAATGCCGAACTCCGTAGAGAGCATTGTGGTCCTGGGTACAAATGGTCAGGGGACAGTGCGGCTCGAAGGGTCAGTCTTGGAGAGCTTTATGA
AGGCTATGAGAAATTGAAGTCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGCACAGTTCGAGGACTTGGGTGTGAGCCACTTACTCAGTACCGCTGTATTGTAC
TGATCCACCACCAGATTTTTGCAGGTTATGAGACCATATCTGGACTTGGTGATGAGGAGGAGGCTTGGAAGAGGAGACCATTAGATAGTAGCTAG
Protein sequenceShow/hide protein sequence
MGESGQYADSISLPLWGQDRIGSWEHNLTRWNSLLPDFREADESGVMDTREGLTSRYWSISVDTENMSAVRRVQLSIRSHCDQQAKRLLRFRSLERCWRRTVKSTTKVAA
SREPRVSLRAAPSRCVRVVSLRSQLRGVFALFWVVTASPSDFAPSRCSFGFESLEFDHPLPKERSSTLFGVWDNLSGVKTGPSGKFLHCPCHRVPWVIWPRGDAQFKALG
KNGQGSNAELRREHCGPGYKWSGDSAARRVSLGELYEGYEKLKSSGALGNMAKGRCTVRGLGCEPLTQYRCIVLIHHQIFAGYETISGLGDEEEAWKRRPLDSS