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Spg006027 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006027
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:31585449..31586627
RNA-Seq ExpressionSpg006027
SyntenySpg006027
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]5.9e-0867.35Show/hide
Query:  SARVFFTPSIGYVTLLTLSVLRDNDVVVSAGWAPLRQRRCECWADPTTS
        S R+  T   GYV+LLTL+VLRDND +VSAG  PLRQR+ ECWA PTTS
Subjt:  SARVFFTPSIGYVTLLTLSVLRDNDVVVSAGWAPLRQRRCECWADPTTS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein2.8e-0867.35Show/hide
Query:  SARVFFTPSIGYVTLLTLSVLRDNDVVVSAGWAPLRQRRCECWADPTTS
        S R+  T   GYV+LLTL+VLRDND +VSAG  PLRQR+ ECWA PTTS
Subjt:  SARVFFTPSIGYVTLLTLSVLRDNDVVVSAGWAPLRQRRCECWADPTTS
A0A5A7T7M6 Reverse transcriptase9.5e-0477.14Show/hide
Query:  LLTLSVLRDNDVVVSAGWAPLRQRRCECWADPTTS
        L TLSVL DND VVSAG APLRQRR EC   PTTS
Subjt:  LLTLSVLRDNDVVVSAGWAPLRQRRCECWADPTTS
A0A5D3BTP3 Reverse transcriptase9.5e-0477.14Show/hide
Query:  LLTLSVLRDNDVVVSAGWAPLRQRRCECWADPTTS
        L TLSVL DND VVSAG APLRQRR EC   PTTS
Subjt:  LLTLSVLRDNDVVVSAGWAPLRQRRCECWADPTTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTGTAGGTCCATTAGATATATATTCTCTCAAAATCGTGGCTTGCATTTTGCTAAGAACCCATGGTTCTCTCATATTTTCTTCTCTCTTAATTCATCATGCTCGGG
TTCCCACAAGCCCGTTCTAAGGCCGGAGAATAGTGGGGAAGATCTTGGTGGTCGTCTACGTCAGCATGCTTTAATCCACGAAATTAATGAAAATCAAGGCCCAAGATCCG
CTAACGCTTCCGCTCGAGTGTTCTTCACTCCTTCAATTGGTTATGTAACGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGTGGGCCCCA
CTACGACAAAGACGATGTGAGTGTTGGGCAGACCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCTGTAGGTCCATTAGATATATATTCTCTCAAAATCGTGGCTTGCATTTTGCTAAGAACCCATGGTTCTCTCATATTTTCTTCTCTCTTAATTCATCATGCTCGGG
TTCCCACAAGCCCGTTCTAAGGCCGGAGAATAGTGGGGAAGATCTTGGTGGTCGTCTACGTCAGCATGCTTTAATCCACGAAATTAATGAAAATCAAGGCCCAAGATCCG
CTAACGCTTCCGCTCGAGTGTTCTTCACTCCTTCAATTGGTTATGTAACGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGTGGGCCCCA
CTACGACAAAGACGATGTGAGTGTTGGGCAGACCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MTCRSIRYIFSQNRGLHFAKNPWFSHIFFSLNSSCSGSHKPVLRPENSGEDLGGRLRQHALIHEINENQGPRSANASARVFFTPSIGYVTLLTLSVLRDNDVVVSAGWAP
LRQRRCECWADPTTS