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Spg006034 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006034
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold7:31532758..31536585
RNA-Seq ExpressionSpg006034
SyntenySpg006034
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6627030.1 hypothetical protein CIPAW_15G094300 [Carya illinoinensis]1.1e-5540.69Show/hide
Query:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGP--
        DEAFGYLKRVIVTP VYPRL EFLHFDIQSTG KSHCV  R    +VPSPSP RH ATRSRRGSSS+SPPTADG+             + R + ++ P  
Subjt:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGP--

Query:  -------------------------------RDFQGPTG-----------------------------------------------------AHRTP---
                                       R F+G  G                                                      HR P   
Subjt:  -------------------------------RDFQGPTG-----------------------------------------------------AHRTP---

Query:  -----------------------------------------------------------------------------RDYRCGPPPEFPLASPCSCIVHN
                                                                                     R YRCGPPPEFPLASP S IVH+
Subjt:  -----------------------------------------------------------------------------RDYRCGPPPEFPLASPCSCIVHN

Query:  LSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA
        LSGPDR+A TRTLLRRSRSVGGA+H+GIPP+SFLAPY FT PLTRTHVRLLGP FK GRMG PQ DARS QMPKHA
Subjt:  LSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA

KAG6627046.1 hypothetical protein CIPAW_15G095900 [Carya illinoinensis]1.1e-5540.69Show/hide
Query:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGP--
        DEAFGYLKRVIVTP VYPRL EFLHFDIQSTG KSHCV  R    +VPSPSP RH ATRSRRGSSS+SPPTADG+             + R + ++ P  
Subjt:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGP--

Query:  -------------------------------RDFQGPTG-----------------------------------------------------AHRTP---
                                       R F+G  G                                                      HR P   
Subjt:  -------------------------------RDFQGPTG-----------------------------------------------------AHRTP---

Query:  -----------------------------------------------------------------------------RDYRCGPPPEFPLASPCSCIVHN
                                                                                     R YRCGPPPEFPLASP S IVH+
Subjt:  -----------------------------------------------------------------------------RDYRCGPPPEFPLASPCSCIVHN

Query:  LSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA
        LSGPDR+A TRTLLRRSRSVGGA+H+GIPP+SFLAPY FT PLTRTHVRLLGP FK GRMG PQ DARS QMPKHA
Subjt:  LSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA

KAG6627047.1 hypothetical protein CIPAW_15G096000 [Carya illinoinensis]1.4e-5541.49Show/hide
Query:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGY-------------------------
        DEAFGYLKRVIVTP VYPRL EFLHFDIQSTG KSHCV  R    +VPSPSP RH ATRSRRGSSS+SPPTADG+                         
Subjt:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGY-------------------------

Query:  ---------------------EYDRAWE-----------------------ALGP----RDFQ-------------------------------------
                                R W                        A GP      FQ                                     
Subjt:  ---------------------EYDRAWE-----------------------ALGP----RDFQ-------------------------------------

Query:  -----------------------------------------GPTGA---------------------------HRTPRDYRCGPPPEFPLASPCSCIVHN
                                                 GP GA                            R  R YRCGPPPEFPLASP S IVH+
Subjt:  -----------------------------------------GPTGA---------------------------HRTPRDYRCGPPPEFPLASPCSCIVHN

Query:  LSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA
        LSGPDR+A TRTLLRRSRSVGGA+H+GIPP+SFLAPY FT PLTRTHVRLLGP FK GRMG PQ DARS QMPKHA
Subjt:  LSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA

KAG6627049.1 hypothetical protein CIPAW_15G096200 [Carya illinoinensis]6.4e-5640.69Show/hide
Query:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGP--
        DEAFGYLKRVIVTP VYPRL EFLHFDIQSTG KSHCV  R    +VPSPSP RH ATRSRRGSSS+SPPTADG+             + R + ++ P  
Subjt:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGP--

Query:  -------------------------------RDFQGPTG-----------------------------------------------------AHRTP---
                                       R F+G  G                                                      HR P   
Subjt:  -------------------------------RDFQGPTG-----------------------------------------------------AHRTP---

Query:  -----------------------------------------------------------------------------RDYRCGPPPEFPLASPCSCIVHN
                                                                                     R YRCGPPPEFPLASP S IVH+
Subjt:  -----------------------------------------------------------------------------RDYRCGPPPEFPLASPCSCIVHN

Query:  LSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA
        LSGPDR+A TRTLLRRSRSVGGA+H+GIPP+SFLAPY FT PLTRTHVRLLGP FK GRMG PQ DARS QMPKHA
Subjt:  LSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA

KAG6627116.1 hypothetical protein CIPAW_15G102900 [Carya illinoinensis]2.8e-5945.88Show/hide
Query:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGYE----------YDRAWE--------
        DEAFGYLKRVIVTP VYPRL EFLHFDIQSTG KSHCV  R    +VPSPSP RH ATRSRRGSSS+SPPTADG              R W         
Subjt:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER----VVPSPSPDRHVATRSRRGSSSTSPPTADGYE----------YDRAWE--------

Query:  ---------------ALGP----RDFQ-------------------------------------------------------------------------
                       A GP      FQ                                                                         
Subjt:  ---------------ALGP----RDFQ-------------------------------------------------------------------------

Query:  -----GPTGA---------------------------HRTPRDYRCGPPPEFPLASPCSCIVHNLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAP
             GP GA                            R  R YRCGPPPEFPLASP S IVH+LSGPDR+A TRTLLRRSRSVGGA+H+GIPP+SFLAP
Subjt:  -----GPTGA---------------------------HRTPRDYRCGPPPEFPLASPCSCIVHNLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAP

Query:  YEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA
        Y FT PLTRTHVRLLGP FK GRMG PQ DARS QMPKHA
Subjt:  YEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHA

TrEMBL top hitse value%identityAlignment
A0A0R0GHD3 Uncharacterized protein8.9e-5639.19Show/hide
Query:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCV-------PERVVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALG
        DEAFGYLKRVIVTP VYPRL EFLHFDIQSTG KSHCV       PE  VP+PSPDRH  TRSRRGSSS+SPPTADG+             + R + ++ 
Subjt:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCV-------PERVVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALG

Query:  P---------------------------------RDFQGPTG----------------------------------------------------------
        P                                 R F+G  G                                                          
Subjt:  P---------------------------------RDFQGPTG----------------------------------------------------------

Query:  ----------------------------AHRTP---------------------------------------------RDYRCGPPPEFPLASPCSCIVH
                                     HR P                                             R YRCGPPPEFPLASP S IVH
Subjt:  ----------------------------AHRTP---------------------------------------------RDYRCGPPPEFPLASPCSCIVH

Query:  NLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHARGLALPATIGTTTSPQ
        +LSGPDR+A TRTL RRS SVGGA+H GIPP+SFLAPY FT PLTRTHVRLLGP FK GRMGSPQ DARSAQ+P+HA+G      +G   +P+
Subjt:  NLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHARGLALPATIGTTTSPQ

A0A0R0GHJ7 Uncharacterized protein5.6e-5047.06Show/hide
Query:  DDEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPERVVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGPRDF--
        +DEAFGYLKRVIVTP VYPRL +F     ++ G      PE  VP+PSPDRH  TRSRRGSSS+SPPTADG+             + R + ++ P     
Subjt:  DDEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPERVVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGPRDF--

Query:  ----------------------------------QGPTGAHRTP-------------RDYRCGP---------------------PPEFPLASPCSCIVH
                                          +G TG H T              R  R G                       PEFPLASP S IVH
Subjt:  ----------------------------------QGPTGAHRTP-------------RDYRCGP---------------------PPEFPLASPCSCIVH

Query:  NLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQ
        +LSGPDR+A TRTL RRS SVGGA+H GIPP+SFLAPY FT PLTRTHVRLLGP FK GRMGSPQ DARSAQ
Subjt:  NLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQ

A0A0R0GR12 Uncharacterized protein9.9e-4741.34Show/hide
Query:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER--------------------------------------------------------VVP
        DEAFGYLKRVIVTP VYPRL EFLHFDIQSTG KSHCV  R                                                        +VP
Subjt:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPER--------------------------------------------------------VVP

Query:  SP------SPDRHVAT---------------RSRRGSSST---------------------------------------------------SPPTADGYE
        S        PD  ++T               R R G  +T                                                    P +  G+ 
Subjt:  SP------SPDRHVAT---------------RSRRGSSST---------------------------------------------------SPPTADGYE

Query:  YDR-------AWEALGPRDFQG-PTGAHRTPRDYRCGPPPEFPLASPCSCIVHNLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRT
         DR       AW     R F   P    R  R YRCGPPPEFPLASP S IVH+LSGPDR+A TRTL RRS SVGGA+H GIPP+SFLAPY FT PLTRT
Subjt:  YDR-------AWEALGPRDFQG-PTGAHRTPRDYRCGPPPEFPLASPCSCIVHNLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRT

Query:  HVRLLGPYFKMGRMGSPQVDARSAQMPKH
        HVRLLGP FK GRMGSPQ DARSAQ+P+H
Subjt:  HVRLLGPYFKMGRMGSPQVDARSAQMPKH

A0A2G2V096 Protein TAR12.9e-4665.19Show/hide
Query:  PERVVPSPSPDRHVATRSRRGSSSTSPPTADGYEYDRAWEALGPRDFQGPTGAHRTPRDYRCGPPPEFPLASPCSCIVHNLSGPDRHAHTRTLLRRSRSV
        PE  VPSPSP RH  TRSR GSSS SPP ADG+                P    R    Y CGPPPEFPLASP S IVH+LSGPDR+AHTRTLLRRSRSV
Subjt:  PERVVPSPSPDRHVATRSRRGSSSTSPPTADGYEYDRAWEALGPRDFQGPTGAHRTPRDYRCGPPPEFPLASPCSCIVHNLSGPDRHAHTRTLLRRSRSV

Query:  GGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHARG
         GA   GIPP+SFL PY FT PLT THVRLLG  FK GRMGSPQ   RSA+MPKHA G
Subjt:  GGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHARG

A0A6N2K4X0 Uncharacterized protein2.9e-5438.35Show/hide
Query:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPERVVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGP------
        DEAFGYLKRVIVTP VYPRL EFLHFDIQSTG KSHC PER VPSPSP RH  TRSRRGSSS+SPPTADG+             + R + ++ P      
Subjt:  DEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPERVVPSPSPDRHVATRSRRGSSSTSPPTADGY------------EYDRAWEALGP------

Query:  ---------------------------RDFQGPTG-----------------------------------------------------------------
                                   R F+G  G                                                                 
Subjt:  ---------------------------RDFQGPTG-----------------------------------------------------------------

Query:  -----------------------------------------AHRTP--------------------------------------------------RDYR
                                                  HR P                                                  R YR
Subjt:  -----------------------------------------AHRTP--------------------------------------------------RDYR

Query:  CGPPPEFPLASPCSCIVHNLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHARGLAL
        CGPPPEFPLASP S IVH+LSGPDRHA TRTLLRRSRSVGGA+ EGIPPVSFLAPY FT PLTRTHVRLLGP FK GRMGSPQ DARSA           
Subjt:  CGPPPEFPLASPCSCIVHNLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHARGLAL

Query:  PATIGTTTSPQA
         +TI  T SPQA
Subjt:  PATIGTTTSPQA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCATGCGTCACTTCTAGCCAAGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGTACGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC
CGTCGTTTACCCGCGCTTGGCTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCATAAATCACATTGCGTTCCCGAGAGAGTCGTTCCTAGTCCGTCCCCCGACCGGC
ACGTGGCGACCCGCTCTCGCCGCGGAAGCAGCTCAACCAGTCCACCGACTGCCGACGGTTATGAGTACGACCGAGCGTGGGAGGCACTCGGTCCTCGGGATTTTCAAGGG
CCAACGGGGGCGCACCGGACACCACGCGACTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCTGCTCATGCATAGTTCACAATCTTTCGGGTCCCGACAG
ACATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTTGGTGGTGCAAGCCACGAGGGGATCCCACCAGTCAGCTTCCTTGCGCCTTACGAGTTTACTCACCCGT
TAACTCGCACACATGTCAGACTCCTTGGTCCGTATTTCAAGATGGGTCGAATGGGGAGCCCACAGGTCGATGCCAGGAGCGCACAGATGCCGAAGCACGCCCGAGGGCTC
GCGCTGCCAGCCACGATTGGGACGACAACGTCTCCACAGGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCATGCGTCACTTCTAGCCAAGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGTACGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC
CGTCGTTTACCCGCGCTTGGCTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCATAAATCACATTGCGTTCCCGAGAGAGTCGTTCCTAGTCCGTCCCCCGACCGGC
ACGTGGCGACCCGCTCTCGCCGCGGAAGCAGCTCAACCAGTCCACCGACTGCCGACGGTTATGAGTACGACCGAGCGTGGGAGGCACTCGGTCCTCGGGATTTTCAAGGG
CCAACGGGGGCGCACCGGACACCACGCGACTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCTGCTCATGCATAGTTCACAATCTTTCGGGTCCCGACAG
ACATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTTGGTGGTGCAAGCCACGAGGGGATCCCACCAGTCAGCTTCCTTGCGCCTTACGAGTTTACTCACCCGT
TAACTCGCACACATGTCAGACTCCTTGGTCCGTATTTCAAGATGGGTCGAATGGGGAGCCCACAGGTCGATGCCAGGAGCGCACAGATGCCGAAGCACGCCCGAGGGCTC
GCGCTGCCAGCCACGATTGGGACGACAACGTCTCCACAGGCGTAA
Protein sequenceShow/hide protein sequence
MSACVTSSQDSDLEAFSHNPAYDDEAFGYLKRVIVTPVVYPRLAEFLHFDIQSTGHKSHCVPERVVPSPSPDRHVATRSRRGSSSTSPPTADGYEYDRAWEALGPRDFQG
PTGAHRTPRDYRCGPPPEFPLASPCSCIVHNLSGPDRHAHTRTLLRRSRSVGGASHEGIPPVSFLAPYEFTHPLTRTHVRLLGPYFKMGRMGSPQVDARSAQMPKHARGL
ALPATIGTTTSPQA