; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006173 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006173
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat (PPR-like) superfamily protein
Genome locationscaffold4:4775758..4776411
RNA-Seq ExpressionSpg006173
SyntenySpg006173
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606718.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]3.5e-5789.06Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GY REALQLYGKM+NFGVLADGFTFPLVLRASSNLG FNLCK+LHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
         NH+HVVNEL+GMY KL RMDD RKVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

KAG7036432.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-5789.06Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GY REALQLYGKM+NFGVLADGFTFPLVLRASSNLG FNLCK+LHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
         NH+HVVNEL+GMY KL RMDD RKVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

XP_022148095.1 putative pentatricopeptide repeat-containing protein At1g17630 [Momordica charantia]2.6e-6090.62Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FVAARLVSVYARSG VFDARKVFD++PFEGLSNLLLWNSIIRANVSHGYC E LQLYGKMR  GVL DGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
        QNH+HVVNELIGMYAKLGRM D +KVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

XP_022997825.1 putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima]1.1e-5891.41Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLG FNLCK LHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
        QNH+HVVNELIGMY KL RM D RKVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

XP_023523771.1 putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita pepo subsp. pepo]4.1e-5890.62Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GY REALQLYGKMRNFGVLADGFTFPLVLRASSNLG FNLCK+LHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
        QNH+HVVNEL+GMY KL RMDD RKVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

TrEMBL top hitse value%identityAlignment
A0A0A0LFT1 Uncharacterized protein6.0e-5582.81Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FV+ARLVS+Y+R G V DARKVF S+PFE  SN LLWNSIIRANV HGYC EALQLYGKMRN+GVL DGFTFPL+LRASSNLG+FN+CKNLHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
        QNH+HV NELIGMYAKL RMDD RKVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

A0A5A7U7B1 Putative pentatricopeptide repeat-containing protein1.1e-5382.03Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FV+ARLVS+Y+R G V DARKVF S+PFE LSN LLWNSIIRANV HGYC EAL LYGKMRN+GVL DGFTFPLVLRASSNLG+ ++CKNLHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
        QNH+HV NELIGMYAKL RMDD RKVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

A0A6J1D1Z6 putative pentatricopeptide repeat-containing protein At1g176301.2e-6090.62Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FVAARLVSVYARSG VFDARKVFD++PFEGLSNLLLWNSIIRANVSHGYC E LQLYGKMR  GVL DGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
        QNH+HVVNELIGMYAKLGRM D +KVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

A0A6J1GD03 putative pentatricopeptide repeat-containing protein At1g176305.4e-5687.5Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FVAARLVSVYARSGFVFDARKVFD+ PFE L NLLLWNSIIRANV  GY REALQLYGKM+NFGVLADGFTFPLVLRASSNLG FNLCK+LHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
         NH+HVVNEL+GMY KL RMDD RKVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

A0A6J1KAZ0 putative pentatricopeptide repeat-containing protein At1g176305.2e-5991.41Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FVAARLVSVYARSGFVFDARKVFD+ PFEGLSNLLLWNSIIRANV  GYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLG FNLCK LHCHVVQFGF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
        QNH+HVVNELIGMY KL RM D RKVFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

SwissProt top hitse value%identityAlignment
Q9FK33 Pentatricopeptide repeat-containing protein At5g50390, chloroplastic1.4e-1635.16Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FV+  L+ +Y++ G + DAR  F+  P +     + WN++I     HGY  EAL L   MR+ GV  D FT  +++R S+ L    L K  H  +++ GF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
        ++ +     L+  Y+K GR+D  R VFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD

Q9FXH1 Pentatricopeptide repeat-containing protein At1g197202.4e-1637.01Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FV  +L+S+YA+ G + DARKVFDS       NL  W+++I A       RE  +L+  M   GVL D F FP +L+  +N G     K +H  V++ G 
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVF
         + + V N ++ +YAK G +D   K F
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVF

Q9LFL5 Pentatricopeptide repeat-containing protein At5g168609.0e-1637.96Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRN-FGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFG
        FV   LV++Y+R   + DARKVFD      + +++ WNSII +    G  + AL+++ +M N FG   D  T   VL   ++LG+ +L K LHC  V   
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRN-FGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFG

Query:  FQNHMHVVNELIGMYAKLGRMDDVRKVFDMQSFVDLL
           +M V N L+ MYAK G MD+   VF   S  D++
Subjt:  FQNHMHVVNELIGMYAKLGRMDDVRKVFDMQSFVDLL

Q9LNP2 Putative pentatricopeptide repeat-containing protein At1g176302.2e-3050.79Show/hide
Query:  VAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQ
        +AA L+SVYAR G + DAR VF++     LS+L LWNSI++ANVSHG    AL+LY  MR  G+  DG+  PL+LRA   LG F LC+  H  V+Q G +
Subjt:  VAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQ

Query:  NHMHVVNELIGMYAKLGRMDDVRKVF
         ++HVVNEL+ +Y K GRM D   +F
Subjt:  NHMHVVNELIGMYAKLGRMDDVRKVF

Q9SB36 Pentatricopeptide repeat-containing protein At4g25270, chloroplastic3.1e-1638.06Show/hide
Query:  VAARLVSVYARSGF------VFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHV
        ++++LV +YA  G+      VFD     DSSPF        WNS+I      G   +A+ LY +M   GV  D FTFP VL+A   +GS  + + +H  +
Subjt:  VAARLVSVYARSGF------VFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHV

Query:  VQFGFQNHMHVVNELIGMYAKLGRMDDVRKVFDM
        V+ GF   ++V+N L+ MYAK G +   R VFDM
Subjt:  VQFGFQNHMHVVNELIGMYAKLGRMDDVRKVFDM

Arabidopsis top hitse value%identityAlignment
AT1G17630.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.6e-3150.79Show/hide
Query:  VAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQ
        +AA L+SVYAR G + DAR VF++     LS+L LWNSI++ANVSHG    AL+LY  MR  G+  DG+  PL+LRA   LG F LC+  H  V+Q G +
Subjt:  VAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQ

Query:  NHMHVVNELIGMYAKLGRMDDVRKVF
         ++HVVNEL+ +Y K GRM D   +F
Subjt:  NHMHVVNELIGMYAKLGRMDDVRKVF

AT1G19720.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.7e-1737.01Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FV  +L+S+YA+ G + DARKVFDS       NL  W+++I A       RE  +L+  M   GVL D F FP +L+  +N G     K +H  V++ G 
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVF
         + + V N ++ +YAK G +D   K F
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVF

AT4G25270.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-1738.06Show/hide
Query:  VAARLVSVYARSGF------VFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHV
        ++++LV +YA  G+      VFD     DSSPF        WNS+I      G   +A+ LY +M   GV  D FTFP VL+A   +GS  + + +H  +
Subjt:  VAARLVSVYARSGF------VFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHV

Query:  VQFGFQNHMHVVNELIGMYAKLGRMDDVRKVFDM
        V+ GF   ++V+N L+ MYAK G +   R VFDM
Subjt:  VQFGFQNHMHVVNELIGMYAKLGRMDDVRKVFDM

AT5G16860.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.4e-1737.96Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRN-FGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFG
        FV   LV++Y+R   + DARKVFD      + +++ WNSII +    G  + AL+++ +M N FG   D  T   VL   ++LG+ +L K LHC  V   
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRN-FGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFG

Query:  FQNHMHVVNELIGMYAKLGRMDDVRKVFDMQSFVDLL
           +M V N L+ MYAK G MD+   VF   S  D++
Subjt:  FQNHMHVVNELIGMYAKLGRMDDVRKVFDMQSFVDLL

AT5G50390.1 Pentatricopeptide repeat (PPR-like) superfamily protein9.8e-1835.16Show/hide
Query:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF
        FV+  L+ +Y++ G + DAR  F+  P +     + WN++I     HGY  EAL L   MR+ GV  D FT  +++R S+ L    L K  H  +++ GF
Subjt:  FVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGF

Query:  QNHMHVVNELIGMYAKLGRMDDVRKVFD
        ++ +     L+  Y+K GR+D  R VFD
Subjt:  QNHMHVVNELIGMYAKLGRMDDVRKVFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTCGTCGCCGCTCGGCTTGTGTCCGTCTATGCCCGTTCTGGGTTTGTTTTCGATGCCCGGAAAGTGTTTGATTCGTCGCCATTTGAAGGTTTGTCGAACTTGCT
GTTATGGAATTCGATTATAAGAGCAAATGTATCTCATGGGTACTGCAGAGAAGCGCTTCAACTTTATGGGAAAATGAGAAATTTTGGGGTTTTGGCTGATGGGTTTACTT
TTCCTCTGGTTTTGAGGGCTTCTTCCAATTTGGGTAGTTTCAACTTGTGCAAGAATCTTCATTGTCATGTTGTGCAATTTGGATTCCAAAATCATATGCATGTTGTGAAT
GAATTGATAGGAATGTATGCGAAGCTCGGTCGAATGGATGATGTTAGGAAAGTGTTTGATATGCAGTCATTTGTGGATTTGCTTCCAATGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTCGTCGCCGCTCGGCTTGTGTCCGTCTATGCCCGTTCTGGGTTTGTTTTCGATGCCCGGAAAGTGTTTGATTCGTCGCCATTTGAAGGTTTGTCGAACTTGCT
GTTATGGAATTCGATTATAAGAGCAAATGTATCTCATGGGTACTGCAGAGAAGCGCTTCAACTTTATGGGAAAATGAGAAATTTTGGGGTTTTGGCTGATGGGTTTACTT
TTCCTCTGGTTTTGAGGGCTTCTTCCAATTTGGGTAGTTTCAACTTGTGCAAGAATCTTCATTGTCATGTTGTGCAATTTGGATTCCAAAATCATATGCATGTTGTGAAT
GAATTGATAGGAATGTATGCGAAGCTCGGTCGAATGGATGATGTTAGGAAAGTGTTTGATATGCAGTCATTTGTGGATTTGCTTCCAATGGACTAG
Protein sequenceShow/hide protein sequence
MPFVAARLVSVYARSGFVFDARKVFDSSPFEGLSNLLLWNSIIRANVSHGYCREALQLYGKMRNFGVLADGFTFPLVLRASSNLGSFNLCKNLHCHVVQFGFQNHMHVVN
ELIGMYAKLGRMDDVRKVFDMQSFVDLLPMD