; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006193 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006193
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold4:4041622..4049548
RNA-Seq ExpressionSpg006193
SyntenySpg006193
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN69126.1 hypothetical protein VITISV_008195 [Vitis vinifera]5.5e-5842.91Show/hide
Query:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG
        M IISW+ RG+GS KKR ++KNFLSS  P +V+IQETK  + +R+ + S+WS RN  WA++   GASGGI+I+W+      +E+V G FS+SI  ++   
Subjt:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG

Query:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL
         ++W++ VYGPN+S  R+ FW EL+D+  L  P W +GGDF+V R + EK   +  T  MK F+ FI D ++ D PL +  ++WS+ + NP    +DRFL
Subjt:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL

Query:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWW
         ++     F  +    L R T DH+PI L     KWGP PF+  N WL H +F      WW
Subjt:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWW

RVX11275.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]6.5e-5942.91Show/hide
Query:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG
        M IISW+ RG+GS KKR ++KNFLSS  P +V+IQETK  + +R+ + S+WS RN  WA++   GASGGI+I+W+      +E+V G FS+SI  ++ + 
Subjt:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG

Query:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL
         ++W++ VYGPN+S  R+ FW EL+D+  L  P W +GGDF+V R + EK   +  T  MK F+ FI D ++ D PL +  ++WS+ + NP    +DRFL
Subjt:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL

Query:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWW
         ++     F  +    L R T DH+PI L     KWGP PF+  N WL H +F      WW
Subjt:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWW

RVX11275.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]6.5e-2728.42Show/hide
Query:  QEPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKKRHLIYNSIEIRVSRGDKMLFWEDVWLGATSLQSKYPSLFNLSLKKEASIAD-LWNPID
        +E  ALW ++I + +G   N   + +    + R PWKAI              V  GD++ FW+D+W G   L ++YP L ++   K A I+  L     
Subjt:  QEPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKKRHLIYNSIEIRVSRGDKMLFWEDVWLGATSLQSKYPSLFNLSLKKEASIAD-LWNPID

Query:  GAWNLHLRRHLRESEILEWVVLSHQLSFFSFR-DVDDLWIWQLGDKGIFTTGSLTRSLASLSQPNCRDFYSLLWRGHMPKKVKFFIWELSHACINTADII
         +WN + RR+L +SEI +   L   L        V D   W +   G+FT  S   +L+   +         +W   +P KVK F+W ++H  +NT D++
Subjt:  GAWNLHLRRHLRESEILEWVVLSHQLSFFSFR-DVDDLWIWQLGDKGIFTTGSLTRSLASLSQPNCRDFYSLLWRGHMPKKVKFFIWELSHACINTADII

Query:  QRRNPESNLSPNCRSMCNRASETQIHLFSSCIFATAFLDHIQSAFGWQFVRPGDILSLLHYSLIGHPFKKDTKILWRN
        Q R P   LSPN   +C +  ET  HLF  C         +       +V P  I  +   +  G    K   +LW++
Subjt:  QRRNPESNLSPNCRSMCNRASETQIHLFSSCIFATAFLDHIQSAFGWQFVRPGDILSLLHYSLIGHPFKKDTKILWRN

RVX11275.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.1e-5831.21Show/hide
Query:  KKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHL-SLADGFTVWITGVYGPNS
        +KR LIK  + +  P LV + E K+ +I+ + +KS+   R + WAS+D  G +GG+++ W+    +  E+  G +S+S+   +  DGF+    GVYGP  
Subjt:  KKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHL-SLADGFTVWITGVYGPNS

Query:  SKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFLITDSIVSKFSAAT
          ++  FW+EL  ++ L    W +GGDF+  R+  E+ + +  T  M++F+  I +  ++D PL+ G F+W     +   + +DRFLI+D     F   T
Subjt:  SKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFLITDSIVSKFSAAT

Query:  ARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTPSQ---EPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKKRH
           L R+  DH PI L  G      +PF+  N WL    F + V SWW     +   E E LW++II++K+ +                G WKAI     
Subjt:  ARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTPSQ---EPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKKRH

Query:  LIYNSIEIRVSRGDKMLFWEDVWLGATSLQSKYPSLFNLSLKKEASIADLW--NPIDGAWNLHLRRHLRESEILEWVVLSHQLSFFSF-RDVDDLWIWQL
           +     +    ++ FW+D+W    SL+  +P LFNLS+ KE  +A+ W  N + G+W L   RHL + E+ E   L  +L   +  R V+D   W+ 
Subjt:  LIYNSIEIRVSRGDKMLFWEDVWLGATSLQSKYPSLFNLSLKKEASIADLW--NPIDGAWNLHLRRHLRESEILEWVVLSHQLSFFSF-RDVDDLWIWQL

Query:  GDKGIFTTGSL-TRSLASLSQPN
           G F+  S  T S  + S P+
Subjt:  GDKGIFTTGSL-TRSLASLSQPN

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]8.4e-6746.99Show/hide
Query:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG
        M I++W+VRG+GS  KRA IK+ ++S  P +VI+ ETK + IN K IKSLWSS +IAWAS+D  GASGGI++LW++      E++ G FS+S+H  LAD 
Subjt:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG

Query:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL
        FT W+TGVY P   K R+LFW+EL DL  LC P W+LG DF++ RW+ E SS   P   M KFN FID   + D  ++NG+++WS+ RP+  ++ I+RFL
Subjt:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL

Query:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTPS
         +     KFS    +RL R   DH+PI L    ++WG  PF+L N WL    F   +E+ W +  S
Subjt:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTPS

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]5.5e-7447.55Show/hide
Query:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG
        M  ++W+VRG+ SWKK ALIK F+S  NP++VI+QETK++ ++   +KSLWS+  I W+++D  G + GI+ILWN       E++EG+FSL+I+  L+DG
Subjt:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG

Query:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL
        F  W++G+YGP++++   LFW+EL DL  LC  HWIL GDF+VTRW+WEKS+    T++M  FN FI+D+ + D+PL+NG+ +WS    N + +LID FL
Subjt:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL

Query:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTP
        +T+  + K     A+R+ R T DHFPI L  G+  WG  PF+  N WL+H TF   +E+WW N P
Subjt:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTP

TrEMBL top hitse value%identityAlignment
A0A438JQQ0 LINE-1 retrotransposable element ORF2 protein3.1e-5942.91Show/hide
Query:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG
        M IISW+ RG+GS KKR ++KNFLSS  P +V+IQETK  + +R+ + S+WS RN  WA++   GASGGI+I+W+      +E+V G FS+SI  ++ + 
Subjt:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG

Query:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL
         ++W++ VYGPN+S  R+ FW EL+D+  L  P W +GGDF+V R + EK   +  T  MK F+ FI D ++ D PL +  ++WS+ + NP    +DRFL
Subjt:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL

Query:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWW
         ++     F  +    L R T DH+PI L     KWGP PF+  N WL H +F      WW
Subjt:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWW

A0A438JQQ0 LINE-1 retrotransposable element ORF2 protein3.2e-2728.42Show/hide
Query:  QEPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKKRHLIYNSIEIRVSRGDKMLFWEDVWLGATSLQSKYPSLFNLSLKKEASIAD-LWNPID
        +E  ALW ++I + +G   N   + +    + R PWKAI              V  GD++ FW+D+W G   L ++YP L ++   K A I+  L     
Subjt:  QEPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKKRHLIYNSIEIRVSRGDKMLFWEDVWLGATSLQSKYPSLFNLSLKKEASIAD-LWNPID

Query:  GAWNLHLRRHLRESEILEWVVLSHQLSFFSFR-DVDDLWIWQLGDKGIFTTGSLTRSLASLSQPNCRDFYSLLWRGHMPKKVKFFIWELSHACINTADII
         +WN + RR+L +SEI +   L   L        V D   W +   G+FT  S   +L+   +         +W   +P KVK F+W ++H  +NT D++
Subjt:  GAWNLHLRRHLRESEILEWVVLSHQLSFFSFR-DVDDLWIWQLGDKGIFTTGSLTRSLASLSQPNCRDFYSLLWRGHMPKKVKFFIWELSHACINTADII

Query:  QRRNPESNLSPNCRSMCNRASETQIHLFSSCIFATAFLDHIQSAFGWQFVRPGDILSLLHYSLIGHPFKKDTKILWRN
        Q R P   LSPN   +C +  ET  HLF  C         +       +V P  I  +   +  G    K   +LW++
Subjt:  QRRNPESNLSPNCRSMCNRASETQIHLFSSCIFATAFLDHIQSAFGWQFVRPGDILSLLHYSLIGHPFKKDTKILWRN

A0A438JQQ0 LINE-1 retrotransposable element ORF2 protein5.4e-5931.21Show/hide
Query:  KKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHL-SLADGFTVWITGVYGPNS
        +KR LIK  + +  P LV + E K+ +I+ + +KS+   R + WAS+D  G +GG+++ W+    +  E+  G +S+S+   +  DGF+    GVYGP  
Subjt:  KKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHL-SLADGFTVWITGVYGPNS

Query:  SKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFLITDSIVSKFSAAT
          ++  FW+EL  ++ L    W +GGDF+  R+  E+ + +  T  M++F+  I +  ++D PL+ G F+W     +   + +DRFLI+D     F   T
Subjt:  SKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFLITDSIVSKFSAAT

Query:  ARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTPSQ---EPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKKRH
           L R+  DH PI L  G      +PF+  N WL    F + V SWW     +   E E LW++II++K+ +                G WKAI     
Subjt:  ARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTPSQ---EPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKKRH

Query:  LIYNSIEIRVSRGDKMLFWEDVWLGATSLQSKYPSLFNLSLKKEASIADLW--NPIDGAWNLHLRRHLRESEILEWVVLSHQLSFFSF-RDVDDLWIWQL
           +     +    ++ FW+D+W    SL+  +P LFNLS+ KE  +A+ W  N + G+W L   RHL + E+ E   L  +L   +  R V+D   W+ 
Subjt:  LIYNSIEIRVSRGDKMLFWEDVWLGATSLQSKYPSLFNLSLKKEASIADLW--NPIDGAWNLHLRRHLRESEILEWVVLSHQLSFFSF-RDVDDLWIWQL

Query:  GDKGIFTTGSL-TRSLASLSQPN
           G F+  S  T S  + S P+
Subjt:  GDKGIFTTGSL-TRSLASLSQPN

A0A6J1CVN2 uncharacterized protein LOC1110146574.1e-6746.99Show/hide
Query:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG
        M I++W+VRG+GS  KRA IK+ ++S  P +VI+ ETK + IN K IKSLWSS +IAWAS+D  GASGGI++LW++      E++ G FS+S+H  LAD 
Subjt:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG

Query:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL
        FT W+TGVY P   K R+LFW+EL DL  LC P W+LG DF++ RW+ E SS   P   M KFN FID   + D  ++NG+++WS+ RP+  ++ I+RFL
Subjt:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL

Query:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTPS
         +     KFS    +RL R   DH+PI L    ++WG  PF+L N WL    F   +E+ W +  S
Subjt:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTPS

A0A6J1E2G6 uncharacterized protein LOC1110254052.6e-7447.55Show/hide
Query:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG
        M  ++W+VRG+ SWKK ALIK F+S  NP++VI+QETK++ ++   +KSLWS+  I W+++D  G + GI+ILWN       E++EG+FSL+I+  L+DG
Subjt:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG

Query:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL
        F  W++G+YGP++++   LFW+EL DL  LC  HWIL GDF+VTRW+WEKS+    T++M  FN FI+D+ + D+PL+NG+ +WS    N + +LID FL
Subjt:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL

Query:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTP
        +T+  + K     A+R+ R T DHFPI L  G+  WG  PF+  N WL+H TF   +E+WW N P
Subjt:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTP

A5AK27 Reverse transcriptase domain-containing protein2.7e-5842.91Show/hide
Query:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG
        M IISW+ RG+GS KKR ++KNFLSS  P +V+IQETK  + +R+ + S+WS RN  WA++   GASGGI+I+W+      +E+V G FS+SI  ++   
Subjt:  MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADG

Query:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL
         ++W++ VYGPN+S  R+ FW EL+D+  L  P W +GGDF+V R + EK   +  T  MK F+ FI D ++ D PL +  ++WS+ + NP    +DRFL
Subjt:  FTVWITGVYGPNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFL

Query:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWW
         ++     F  +    L R T DH+PI L     KWGP PF+  N WL H +F      WW
Subjt:  ITDSIVSKFSAATARRLERITFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWW

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein7.8e-0726.37Show/hide
Query:  IISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMA--DINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSF--FDVKEIVEGMFSLSIHLSLA
        I++ +V G+ S  KR  + +++ S +PS+  IQET +   D +R  IK  W  R I  A+     A   I++     F    +K   EG + +       
Subjt:  IISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMA--DINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSF--FDVKEIVEGMFSLSIHLSLA

Query:  DGFTVWITGVYGPNSSKDRRLFWKE-LADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDI-----PLSNGKFSWSSFRPNPT
        +  T  I  +Y PN+   R  F K+ L+DLQ     H ++ GDF+      ++S+     +  ++ N  +   D+ DI     P S     +S+  P+ T
Subjt:  DGFTVWITGVYGPNSSKDRRLFWKE-LADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDI-----PLSNGKFSWSSFRPNPT

Query:  MTLIDRFLITDSIVSKFSAATARRLERIT---FDHFPICL---ILGKEKWGPAPFKLNNAWLTHHTFLNTVES
         + ID  + + +++SK      +R E IT    DH  I L   I    +     +KLNN  L  +   N +++
Subjt:  MTLIDRFLITDSIVSKFSAATARRLERIT---FDHFPICL---ILGKEKWGPAPFKLNNAWLTHHTFLNTVES

P0C2F6 Putative ribonuclease H protein At1g657501.4e-0820.42Show/hide
Query:  QEPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKK-----RHLIYNSIEIRVSRGDKMLFWEDVWLGATSL----QSKYPSLFNLSLKKEASI
        QE  +LW  ++  K+ +     ++ D      +G W + ++      R ++ + +      G ++ FW D W+    L      + P+  +  + K    
Subjt:  QEPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKK-----RHLIYNSIEIRVSRGDKMLFWEDVWLGATSL----QSKYPSLFNLSLKKEASI

Query:  ADLWNPIDGAWNLHLRRHLRESEILEWVVLSHQLSFFSFRDVDDLWIWQLGDKGIFTTGSLTRSLA--SLSQPNCRDFYSLLWRGHMPKKVKFFIWELSH
         DLW P  G     +  +   +  LE   +   L         D   W+    G F+  S    L    + +PN   F++ LW+  +P++VK F+W + +
Subjt:  ADLWNPIDGAWNLHLRRHLRESEILEWVVLSHQLSFFSFRDVDDLWIWQLGDKGIFTTGSLTRSLA--SLSQPNCRDFYSLLWRGHMPKKVKFFIWELSH

Query:  ACINTADIIQRRNPESNLSPNCRSMCNRASETQIHLFSSC
          + T +   RR+  ++   N   +C    E+ +H+   C
Subjt:  ACINTADIIQRRNPESNLSPNCRSMCNRASETQIHLFSSC

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATAATCTCCTGGGACGTTCGAGGCATGGGCTCTTGGAAAAAGAGAGCTCTTATTAAAAATTTTCTATCCTCCCACAACCCATCGCTGGTGATCATCCAAGAGAC
TAAGATGGCTGATATTAATAGAAAGACTATCAAATCCTTATGGAGTTCGAGGAATATTGCCTGGGCCTCTATCGATGTTGTTGGAGCTTCTGGTGGTATTGTGATCCTTT
GGAACAAATCATTCTTTGATGTCAAGGAGATCGTTGAAGGTATGTTCTCTCTATCCATTCACCTTTCTTTAGCTGATGGCTTCACCGTTTGGATCACAGGAGTTTACGGA
CCCAACTCTTCCAAGGATAGGCGTTTATTCTGGAAAGAGTTAGCGGATCTCCAAGCTCTATGTCTCCCTCATTGGATATTGGGTGGTGATTTCAGTGTGACTCGATGGAC
ATGGGAGAAATCATCACACACGGCCCCAACCCGAGCTATGAAGAAATTCAACAGATTTATTGATGATAATGACATTCAAGACATTCCCCTATCCAATGGCAAATTCTCTT
GGTCCAGTTTCAGACCTAATCCCACCATGACCCTTATCGACAGGTTTCTCATTACCGATAGCATAGTCTCCAAATTCTCAGCTGCCACAGCCCGTAGATTGGAAAGAATC
ACATTTGATCACTTCCCTATTTGTCTCATTTTGGGGAAAGAAAAATGGGGACCAGCCCCTTTTAAGCTCAATAATGCTTGGCTTACCCATCACACCTTCCTTAACACAGT
TGAATCGTGGTGGGAGAACACTCCATCCCAAGAACCAGAAGCCCTTTGGAGGAAAATTATTGCAACAAAATTCGGGCTTGCTGGCAACCCTCACAAGATGGGTGATCAAT
CCATGAGCACAACAAGGGGTCCATGGAAAGCCATCTTCAAGAAAAGGCATCTCATATATAATTCTATTGAGATTAGAGTCAGTAGAGGGGACAAAATGCTGTTTTGGGAG
GATGTATGGCTTGGTGCTACATCTCTTCAATCCAAGTATCCTTCTCTTTTCAATCTATCTCTAAAGAAAGAGGCTTCTATTGCAGATTTATGGAATCCAATTGATGGGGC
TTGGAATCTACATTTAAGAAGACACCTCCGTGAATCTGAAATCCTTGAATGGGTTGTTTTGTCACACCAACTCTCCTTCTTTTCCTTCCGAGATGTGGATGATTTATGGA
TTTGGCAACTTGGGGATAAAGGTATCTTCACCACAGGATCCCTCACTAGAAGCTTGGCCTCTCTATCTCAACCGAATTGCAGGGATTTTTACAGCCTTCTGTGGAGAGGT
CATATGCCTAAAAAAGTTAAGTTTTTCATTTGGGAGCTCAGCCATGCCTGTATCAACACCGCTGACATCATTCAGAGAAGAAATCCCGAGTCAAATCTCTCCCCCAACTG
CCGCAGCATGTGTAACAGAGCAAGCGAGACACAAATTCACCTATTCAGCAGTTGCATTTTCGCCACAGCCTTCTTGGATCATATTCAAAGTGCATTCGGATGGCAATTTG
TTCGACCGGGTGATATCCTATCCCTTCTACACTATTCTCTTATTGGTCACCCTTTCAAAAAAGACACTAAGATCCTTTGGAGGAATTTTTTGGAAACTTCTGATGTCATG
TCTCTTCTATCCTTGATAGAGGAGGTTAGCTTTAGGCCGGATAGGAGGGATATTCGTTTTTGGAACCCTAACCCCTCTAAGGGTTTTTCTTGTCGATCGATGGTGGAGGA
AGACCTCGATCATATCTTGTGGCACTGTGATTTTGCGTGTTCGGTGTGGAACACTTTCTTTGAGATTTTTGGGCTTCAGTTTGCTAGACAAAGGGACTTCAGGGAGATGA
TCGATGAGTTCCTTCCCCATCCTCCATTTCGAGACCAAGGGAACTTCTTATGGCAAACTGGGATTTGTGCTATTATTTGGGGGTTGTGGGGTAAAGCAAAGTCAATAGAT
GCTGGCTTGTATTGGGATGAAGGAGGCTCAACTGGGTGGTTCAGGAGGTGGTTGAGTTTGTGTTTTCTTGAAGAACTTCTGTTTGAAGGGTATCTCAAGGAGAGTGGAGA
AGCGTTCAGTTGTCCAGGAGAGGGAGCTCTTATGAAGAGATGGGAAAACATTCGATCTCATGAGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTATAATCTCCTGGGACGTTCGAGGCATGGGCTCTTGGAAAAAGAGAGCTCTTATTAAAAATTTTCTATCCTCCCACAACCCATCGCTGGTGATCATCCAAGAGAC
TAAGATGGCTGATATTAATAGAAAGACTATCAAATCCTTATGGAGTTCGAGGAATATTGCCTGGGCCTCTATCGATGTTGTTGGAGCTTCTGGTGGTATTGTGATCCTTT
GGAACAAATCATTCTTTGATGTCAAGGAGATCGTTGAAGGTATGTTCTCTCTATCCATTCACCTTTCTTTAGCTGATGGCTTCACCGTTTGGATCACAGGAGTTTACGGA
CCCAACTCTTCCAAGGATAGGCGTTTATTCTGGAAAGAGTTAGCGGATCTCCAAGCTCTATGTCTCCCTCATTGGATATTGGGTGGTGATTTCAGTGTGACTCGATGGAC
ATGGGAGAAATCATCACACACGGCCCCAACCCGAGCTATGAAGAAATTCAACAGATTTATTGATGATAATGACATTCAAGACATTCCCCTATCCAATGGCAAATTCTCTT
GGTCCAGTTTCAGACCTAATCCCACCATGACCCTTATCGACAGGTTTCTCATTACCGATAGCATAGTCTCCAAATTCTCAGCTGCCACAGCCCGTAGATTGGAAAGAATC
ACATTTGATCACTTCCCTATTTGTCTCATTTTGGGGAAAGAAAAATGGGGACCAGCCCCTTTTAAGCTCAATAATGCTTGGCTTACCCATCACACCTTCCTTAACACAGT
TGAATCGTGGTGGGAGAACACTCCATCCCAAGAACCAGAAGCCCTTTGGAGGAAAATTATTGCAACAAAATTCGGGCTTGCTGGCAACCCTCACAAGATGGGTGATCAAT
CCATGAGCACAACAAGGGGTCCATGGAAAGCCATCTTCAAGAAAAGGCATCTCATATATAATTCTATTGAGATTAGAGTCAGTAGAGGGGACAAAATGCTGTTTTGGGAG
GATGTATGGCTTGGTGCTACATCTCTTCAATCCAAGTATCCTTCTCTTTTCAATCTATCTCTAAAGAAAGAGGCTTCTATTGCAGATTTATGGAATCCAATTGATGGGGC
TTGGAATCTACATTTAAGAAGACACCTCCGTGAATCTGAAATCCTTGAATGGGTTGTTTTGTCACACCAACTCTCCTTCTTTTCCTTCCGAGATGTGGATGATTTATGGA
TTTGGCAACTTGGGGATAAAGGTATCTTCACCACAGGATCCCTCACTAGAAGCTTGGCCTCTCTATCTCAACCGAATTGCAGGGATTTTTACAGCCTTCTGTGGAGAGGT
CATATGCCTAAAAAAGTTAAGTTTTTCATTTGGGAGCTCAGCCATGCCTGTATCAACACCGCTGACATCATTCAGAGAAGAAATCCCGAGTCAAATCTCTCCCCCAACTG
CCGCAGCATGTGTAACAGAGCAAGCGAGACACAAATTCACCTATTCAGCAGTTGCATTTTCGCCACAGCCTTCTTGGATCATATTCAAAGTGCATTCGGATGGCAATTTG
TTCGACCGGGTGATATCCTATCCCTTCTACACTATTCTCTTATTGGTCACCCTTTCAAAAAAGACACTAAGATCCTTTGGAGGAATTTTTTGGAAACTTCTGATGTCATG
TCTCTTCTATCCTTGATAGAGGAGGTTAGCTTTAGGCCGGATAGGAGGGATATTCGTTTTTGGAACCCTAACCCCTCTAAGGGTTTTTCTTGTCGATCGATGGTGGAGGA
AGACCTCGATCATATCTTGTGGCACTGTGATTTTGCGTGTTCGGTGTGGAACACTTTCTTTGAGATTTTTGGGCTTCAGTTTGCTAGACAAAGGGACTTCAGGGAGATGA
TCGATGAGTTCCTTCCCCATCCTCCATTTCGAGACCAAGGGAACTTCTTATGGCAAACTGGGATTTGTGCTATTATTTGGGGGTTGTGGGGTAAAGCAAAGTCAATAGAT
GCTGGCTTGTATTGGGATGAAGGAGGCTCAACTGGGTGGTTCAGGAGGTGGTTGAGTTTGTGTTTTCTTGAAGAACTTCTGTTTGAAGGGTATCTCAAGGAGAGTGGAGA
AGCGTTCAGTTGTCCAGGAGAGGGAGCTCTTATGAAGAGATGGGAAAACATTCGATCTCATGAGGATTAA
Protein sequenceShow/hide protein sequence
MIIISWDVRGMGSWKKRALIKNFLSSHNPSLVIIQETKMADINRKTIKSLWSSRNIAWASIDVVGASGGIVILWNKSFFDVKEIVEGMFSLSIHLSLADGFTVWITGVYG
PNSSKDRRLFWKELADLQALCLPHWILGGDFSVTRWTWEKSSHTAPTRAMKKFNRFIDDNDIQDIPLSNGKFSWSSFRPNPTMTLIDRFLITDSIVSKFSAATARRLERI
TFDHFPICLILGKEKWGPAPFKLNNAWLTHHTFLNTVESWWENTPSQEPEALWRKIIATKFGLAGNPHKMGDQSMSTTRGPWKAIFKKRHLIYNSIEIRVSRGDKMLFWE
DVWLGATSLQSKYPSLFNLSLKKEASIADLWNPIDGAWNLHLRRHLRESEILEWVVLSHQLSFFSFRDVDDLWIWQLGDKGIFTTGSLTRSLASLSQPNCRDFYSLLWRG
HMPKKVKFFIWELSHACINTADIIQRRNPESNLSPNCRSMCNRASETQIHLFSSCIFATAFLDHIQSAFGWQFVRPGDILSLLHYSLIGHPFKKDTKILWRNFLETSDVM
SLLSLIEEVSFRPDRRDIRFWNPNPSKGFSCRSMVEEDLDHILWHCDFACSVWNTFFEIFGLQFARQRDFREMIDEFLPHPPFRDQGNFLWQTGICAIIWGLWGKAKSID
AGLYWDEGGSTGWFRRWLSLCFLEELLFEGYLKESGEAFSCPGEGALMKRWENIRSHED