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Spg006200 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006200
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold4:4745680..4746463
RNA-Seq ExpressionSpg006200
SyntenySpg006200
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-5766.48Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV
        MFLV+L+ FEPL+DATS+L QI+KDAD +FT  M  +IASH+SPRFVATLQMS R FTNY +DH + S++SLESFHDAMLDGGS+SSM++H+LE+  QM+
Subjt:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV

Query:  LRFD-ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE
        LR++  S + PPLH EL LSP Q +  LGQV YGK+FTV+SK LR+IIKELPLF  D V V  TS+R+KFSIASKEI +TKE
Subjt:  LRFD-ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]3.9e-6470.88Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV
        MFLVRLE FEPL+DATS+LAQ+AKDAD KFTP M +II S+ SP+FVATLQ+SRR FTN+ +DHN  S++SL+ FHDAMLDGGS+SSMT+HLL+  NQMV
Subjt:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV

Query:  LRFDASGH-APPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE
        LRF+   H  PPLHHEL LSP Q ++ LGQV YG +FTV S+ELRRIIKELPLF  D+V VTVT S++KFSI SKEIILTKE
Subjt:  LRFDASGH-APPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]8.0e-6265.24Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV
        MFLVRL++F+PL DATS LAQIA++AD KFTP  F IIAS+ SPRFVA LQM+   F NY +D++H SRISLESFHDA+LDGG+  SMT+HLL NI Q++
Subjt:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV

Query:  LRFDASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVR-FIC
        LRF++S HAP +HHEL+L+PSQE+D LG+V Y K+F++ SK+LRR+I+ LP+F  DS+CVT T S++KFSIASKEI+LTKE + FIC
Subjt:  LRFDASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVR-FIC

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]1.0e-5662.98Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV
        MFLVRL+NFEP   ATS LA IA++AD KFTP  F I  S+  PRFVA L M+   F NY +D++H SRISLESFHDA+LDGG   SMT+HLL NINQM+
Subjt:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV

Query:  LRFDASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE
        LRF++S HAP + HEL+L PSQE+D LG++ Y K+F++ SK LRR+I+ LP+F  DS+CVT T S++KFSIASKEI+LTKE
Subjt:  LRFDASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE

XP_038875055.1 uncharacterized protein LOC120067580 [Benincasa hispida]1.7e-5666.48Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV
        MFLV+L NFEPL+DATS LAQI+  AD KFTP  F +IA + SPRFVATLQ+S++ FTNY +DH H S++ LESFHDA+LDGGS++SMT+HLLE  NQM+
Subjt:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV

Query:  LRFDA-SGHAPPLHHELTLSPSQ--EDDILGQVTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIIL
        LRF   S   PPLHHELT SP Q  +++I GQ+  GK+F V S+ LRRIIKELP+FQ DS VCV VTSS+IKFSIASKEI+L
Subjt:  LRFDA-SGHAPPLHHELTLSPSQ--EDDILGQVTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIIL

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980101.9e-6470.88Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV
        MFLVRLE FEPL+DATS+LAQ+AKDAD KFTP M +II S+ SP+FVATLQ+SRR FTN+ +DHN  S++SL+ FHDAMLDGGS+SSMT+HLL+  NQMV
Subjt:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV

Query:  LRFDASGH-APPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE
        LRF+   H  PPLHHEL LSP Q ++ LGQV YG +FTV S+ELRRIIKELPLF  D+V VTVT S++KFSI SKEIILTKE
Subjt:  LRFDASGH-APPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE

A0A1S3CL88 uncharacterized protein LOC1035022507.9e-5565.05Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQM
        MFLV+L+NF+PL+DATS LAQI+ D AD KFTP  F IIASH SPRF+ATLQ+S ++FT + +D++H S++SLESFHDA+LDGGS++SMT+HLL+  NQM
Subjt:  MFLVRLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQM

Query:  VLRFDA-SGHAPPLHHELTLSPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIILTK
        +LRFD  S    PLHHELTLSP Q ED+ +GQ  +   KYF V SK LRRIIK+LP+FQ DS + V VT+SR+KFSIASKEIILT+
Subjt:  VLRFDA-SGHAPPLHHELTLSPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIILTK

A0A1S4E4N8 uncharacterized protein LOC1035022633.9e-6265.24Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV
        MFLVRL++F+PL DATS LAQIA++AD KFTP  F IIAS+ SPRFVA LQM+   F NY +D++H SRISLESFHDA+LDGG+  SMT+HLL NI Q++
Subjt:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV

Query:  LRFDASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVR-FIC
        LRF++S HAP +HHEL+L+PSQE+D LG+V Y K+F++ SK+LRR+I+ LP+F  DS+CVT T S++KFSIASKEI+LTKE + FIC
Subjt:  LRFDASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVR-FIC

A0A5D3BTK3 Uncharacterized protein7.4e-5363.19Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV
        MFLVRLE FEPL+DATS+LAQ+AKDAD KFTP M +II S+ SP+FVATLQ+SRR FTN+ +DHN  S++SL+ FHDAMLDGGS+               
Subjt:  MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMV

Query:  LRFDASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEV
                 PPLHHEL LSP Q ++ LGQV YG +FTV S+ELRRIIKELPLF  D+V VTVT S++KFSI SKEIILTKEV
Subjt:  LRFDASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEV

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein7.9e-5565.05Show/hide
Query:  MFLVRLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQM
        MFLV+L+NF+PL+DATS LAQI+ D AD KFTP  F IIASH SPRF+ATLQ+S ++FT + +D++H S++SLESFHDA+LDGGS++SMT+HLL+  NQM
Subjt:  MFLVRLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQM

Query:  VLRFDA-SGHAPPLHHELTLSPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIILTK
        +LRFD  S    PLHHELTLSP Q ED+ +GQ  +   KYF V SK LRRIIK+LP+FQ DS + V VT+SR+KFSIASKEIILT+
Subjt:  VLRFDA-SGHAPPLHHELTLSPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIILTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGGTCAGGCTGGAGAACTTTGAACCTCTTGTGGATGCAACCTCCATACTCGCTCAAATCGCCAAGGATGCCGACGCCAAATTCACTCCGAGGATGTTCTTGAT
CATCGCCTCGCACAGTTCCCCTCGGTTCGTCGCGACGCTGCAGATGTCGCGTCGATTCTTTACGAACTATTTGATCGATCATAATCACGTTTCGAGGATCTCCCTTGAAT
CCTTCCATGATGCTATGTTGGATGGAGGGAGTTACTCTTCAATGACAATGCATCTTCTTGAAAACATAAATCAAATGGTCCTTAGGTTTGATGCTTCAGGGCATGCGCCA
CCGTTGCATCATGAATTGACATTGTCGCCTTCGCAAGAAGACGATATATTGGGTCAAGTTACATATGGGAAATATTTCACAGTTCATTCTAAAGAATTAAGACGTATTAT
AAAAGAATTGCCACTCTTCCAAGCGGATTCAGTTTGTGTTACGGTAACGAGTTCACGAATCAAGTTCTCTATTGCATCTAAGGAGATTATTCTTACGAAAGAGGTACGGT
TCATTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTGGTCAGGCTGGAGAACTTTGAACCTCTTGTGGATGCAACCTCCATACTCGCTCAAATCGCCAAGGATGCCGACGCCAAATTCACTCCGAGGATGTTCTTGAT
CATCGCCTCGCACAGTTCCCCTCGGTTCGTCGCGACGCTGCAGATGTCGCGTCGATTCTTTACGAACTATTTGATCGATCATAATCACGTTTCGAGGATCTCCCTTGAAT
CCTTCCATGATGCTATGTTGGATGGAGGGAGTTACTCTTCAATGACAATGCATCTTCTTGAAAACATAAATCAAATGGTCCTTAGGTTTGATGCTTCAGGGCATGCGCCA
CCGTTGCATCATGAATTGACATTGTCGCCTTCGCAAGAAGACGATATATTGGGTCAAGTTACATATGGGAAATATTTCACAGTTCATTCTAAAGAATTAAGACGTATTAT
AAAAGAATTGCCACTCTTCCAAGCGGATTCAGTTTGTGTTACGGTAACGAGTTCACGAATCAAGTTCTCTATTGCATCTAAGGAGATTATTCTTACGAAAGAGGTACGGT
TCATTTGCTAA
Protein sequenceShow/hide protein sequence
MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDASGHAP
PLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVRFIC