CuGenDBv2

Gene ID	Spg006244
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box domain-containing protein
Genome location	scaffold4:4706012..4706485
RNA-Seq Expression	Spg006244
Synteny	Spg006244
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572228.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-66

85.62

Show/hide

Query:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP  SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKP
        LSRLNRS  + RV TLQDQVQ LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKP
Subjt:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKP

KAG7011864.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-68

85.89

Show/hide

Query:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP  SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV
        LSRLNRS  + RV TLQDQVQ LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Subjt:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

XP_022136160.1 F-box protein SNE-like [Momordica charantia]

4.9e-60

75.46

Show/hide

Query:  MQRNAPQEDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVL
        MQRNA +++N     K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSPPPS++R VVLALGGYKRLYMLCLRP+L
Subjt:  MQRNAPQEDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVL

Query:  SRLN--RSDSLRRVWTLQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV
        +  N  RS  +RRV TLQD +QLSLSLF VD YER+G + GDAAA    AAPSLRFLCKPVNV
Subjt:  SRLN--RSDSLRRVWTLQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

XP_022952371.1 F-box protein SNE-like [Cucurbita moschata]

2.6e-69

86.5

Show/hide

Query:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPP SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV
        LSRLNRS  + RV TLQDQVQ LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Subjt:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

XP_022969281.1 F-box protein SNE-like [Cucurbita maxima]

1.7e-68

85.89

Show/hide

Query:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HVSSPP SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV
        LSRLNRS  + RV TLQDQVQ LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Subjt:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C339 F-box protein SNE-like

2.4e-60

75.46

Show/hide

Query:  MQRNAPQEDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVL
        MQRNA +++N     K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSPPPS++R VVLALGGYKRLYMLCLRP+L
Subjt:  MQRNAPQEDN----NKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVL

Query:  SRLN--RSDSLRRVWTLQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV
        +  N  RS  +RRV TLQD +QLSLSLF VD YER+G + GDAAA    AAPSLRFLCKPVNV
Subjt:  SRLN--RSDSLRRVWTLQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

A0A6J1GK18 F-box protein SNE-like

1.2e-69

86.5

Show/hide

Query:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPP SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV
        LSRLNRS  + RV TLQDQVQ LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Subjt:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

A0A6J1HXD0 F-box protein SNE-like

8.1e-69

85.89

Show/hide

Query:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV
        MQ NAPQ D     N+KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HVSSPP SSVRP++LALGGYKRLYMLCLRPV
Subjt:  MQRNAPQED-----NNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPV

Query:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV
        LSRLNRS  + RV TLQDQVQ LSLSLFCVDYYERNG LGGDAAA    AAPSLRFLCKPVNV
Subjt:  LSRLNRSDSLRRVWTLQDQVQ-LSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

A0A6P4BI13 F-box protein SNE

3.9e-55

73.08

Show/hide

Query:  QRNAPQEDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNR
        Q+N  ++   K+ +F INDH+DIL EILKRLDGPSL AAACVCRLWCA+ RN DSLWEHLCFRHVSSPPPSSVRPVV+ALGGYKRLYM+C+R VLSRL  
Subjt:  QRNAPQEDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNR

Query:  SDSLRRVWTLQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV
        SD +RRVWT  D+VQLSLSLFCVDYYER G   G      ASA+ SL FLCKPVNV
Subjt:  SDSLRRVWTLQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

M5WSV2 F-box domain-containing protein

2.3e-55

73.72

Show/hide

Query:  QRNAPQEDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNR
        Q+    ED  K+ KF INDH+DIL EILKRLDGPSL  AACVCRLW  LARN DSLWEHLCFRHVSSPPPSSVRPVV+ALGGYKRLY +C+RPVLSRL+ 
Subjt:  QRNAPQEDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNR

Query:  SDSLRRVWTLQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV
        SD +RRVWT +D+VQLSLSLFCVDYYER+G LGG      ASA+ SL FLC  VNV
Subjt:  SDSLRRVWTLQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.3e-12

37.41

Show/hide

Query:  QRNAPQEDNNKKIKFSIND-HLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SVRPVVLALGGYKRLYMLCLRPVLSR
        Q   P ED  +  +  + D   D++ E+L+R +  +L AAACV R W  LA  D+ LWE  C R  ++   S   +R VVL+LGG++RL+ + +RP+  R
Subjt:  QRNAPQEDNNKKIKFSIND-HLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SVRPVVLALGGYKRLYMLCLRPVLSR

Query:  ---LNRSDSLRR--VWTLQDQVQLSLSLFCVDYYERNGC
           + R    R+  V   +DQVQLSLSLF + +++   C
Subjt:  ---LNRSDSLRR--VWTLQDQVQLSLSLFCVDYYERNGC

Q9LUB6 F-box protein SNE

4.2e-38

57.86

Show/hide

Query:  QEDNNKKIK------FSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLN
        ++ NNK+ +      FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR VS  P  S+R VV ALGGY+ LY LC+RPVL+RL 
Subjt:  QEDNNKKIK------FSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLN

Query:  RSDSLRRVWTLQDQVQLSLSLFCVDYYER--NGCLGGDAAAAAASAAPSLRFLCKPVNV
             + +WT +DQ+QLSLSL+CV YYER   G   GDA  +      SL FL KPVNV
Subjt:  RSDSLRRVWTLQDQVQLSLSLFCVDYYER--NGCLGGDAAAAAASAAPSLRFLCKPVNV

Q9STX3 F-box protein GID2

1.9e-11

34.62

Show/hide

Query:  DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRL
        + NKK+K +  + +       +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +R VVLALGG++RL+ L L P LS+ 
Subjt:  DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRL

Query:  NRSDSLRRVWTLQDQVQLSLSLFCVDYYER
        N      R    +D+++L+LSL  + YYE+
Subjt:  NRSDSLRRVWTLQDQVQLSLSLFCVDYYER

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.4e-12

34.62

Show/hide

Query:  DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRL
        + NKK+K +  + +       +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +R VVLALGG++RL+ L L P LS+ 
Subjt:  DNNKKIKFSINDHL-------DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSVRPVVLALGGYKRLYMLCLRPVLSRL

Query:  NRSDSLRRVWTLQDQVQLSLSLFCVDYYER
        N      R    +D+++L+LSL  + YYE+
Subjt:  NRSDSLRRVWTLQDQVQLSLSLFCVDYYER

AT5G48170.1 F-box family protein

3.0e-39

57.86

Show/hide

Query:  QEDNNKKIK------FSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLN
        ++ NNK+ +      FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR VS  P  S+R VV ALGGY+ LY LC+RPVL+RL 
Subjt:  QEDNNKKIK------FSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLN

Query:  RSDSLRRVWTLQDQVQLSLSLFCVDYYER--NGCLGGDAAAAAASAAPSLRFLCKPVNV
             + +WT +DQ+QLSLSL+CV YYER   G   GDA  +      SL FL KPVNV
Subjt:  RSDSLRRVWTLQDQVQLSLSLFCVDYYER--NGCLGGDAAAAAASAAPSLRFLCKPVNV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGCGAAATGCGCCTCAAGAAGACAACAACAAGAAAATCAAATTCTCAATCAACGATCACCTCGACATCCTCACCGAAATCCTCAAGCGACTCGACGGCCCCTCCCT
CTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCACCTCTGCTTCCGCCACGTCTCCTCTCCGCCGCCCTCCTCCG
TCCGCCCTGTCGTCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTCCGTCCTGTCCTCAGCCGATTGAATCGCTCCGATTCGCTCCGCCGCGTTTGGACT
CTGCAAGATCAGGTCCAACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGCCTCGGAGGCGATGCCGCGGCGGCGGCGGCCTCCGCGGCTCCGTC
GCTGCGGTTCCTCTGCAAACCGGTGAACGTATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MQRNAPQEDNNKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSVRPVVLALGGYKRLYMLCLRPVLSRLNRSDSLRRVWT
LQDQVQLSLSLFCVDYYERNGCLGGDAAAAAASAAPSLRFLCKPVNV

Spg006244 (gene) of Sponge gourd (cylindrica) v1 genome