; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006274 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006274
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 9
Genome locationscaffold4:4772259..4775781
RNA-Seq ExpressionSpg006274
SyntenySpg006274
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR011425 - Mediator of RNA polymerase II transcription subunit 9
IPR038790 - Mediator of RNA polymerase II transcription subunit 9, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574160.1 Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. sororia]2.4e-5392.52Show/hide
Query:  QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNS
        QLQPQHFP QQQQQQQQQQYHFQQ       QQQQQQQ+QQQQQQQQYHQHQSLASHFHLFHLVEKLAD IENGARDQQSDALV+DLNNHFEKCQQLLNS
Subjt:  QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNS

Query:  ISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
        ISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
Subjt:  ISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE

XP_022148099.1 mediator of RNA polymerase II transcription subunit 9 [Momordica charantia]2.9e-5492.67Show/hide
Query:  QLQPQHFPQQQQQQQQQQQYHF---QQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQL
        QLQPQHFP   QQQQQQQQYHF   QQQQQQRLLQQQQQQQ+QQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALV+DLNNHFEKCQQL
Subjt:  QLQPQHFPQQQQQQQQQQQYHF---QQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQL

Query:  LNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
        LNSISGSLSSKAMTV+GQKKKLEEH+QLLNHRRELIGKYKNSVEELVKG+
Subjt:  LNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE

XP_022944890.1 mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata]1.1e-5393.24Show/hide
Query:  QLQPQHFP-QQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLN
        QLQPQHFP QQQQQQQQQQQYHFQQQ      QQQQQQQ+QQQQQQQQYHQHQSLASHFHLFHLVEKLAD IENGARDQQSDALV+DLNNHFEKCQQLLN
Subjt:  QLQPQHFP-QQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLN

Query:  SISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
        SISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
Subjt:  SISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE

XP_023542032.1 mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo]6.4e-5493.33Show/hide
Query:  QLQPQHFP---QQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQL
        QLQPQHFP   QQQQQQQQQQQYHFQQQQQ    QQQQQQQ+QQQQQQQQYHQHQSLASHFHLFHLVEKLAD IENGARDQQSDALV+DLNNHFEKCQQL
Subjt:  QLQPQHFP---QQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQL

Query:  LNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
        LNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
Subjt:  LNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE

XP_038903145.1 mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida]9.9e-5584.12Show/hide
Query:  QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLL----------------------QQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQ
        QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLL                      QQQQQQQ+QQQQQQQQYHQHQSLASHFHL HLVEKLADAIENG RDQ
Subjt:  QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLL----------------------QQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQ

Query:  QSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP
        QSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKG+P
Subjt:  QSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP

TrEMBL top hitse value%identityAlignment
A0A1S4DWQ6 Mediator of RNA polymerase II transcription subunit 96.1e-5089.8Show/hide
Query:  LQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSI
        LQ Q   QQQQQQQQQQQ   QQQQQQ+  QQQQQQQ+QQQQQQQQYHQHQSLASHFHL HLVEKLADAIENG RDQQSDALV+DLNNHFEKCQQLLNSI
Subjt:  LQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSI

Query:  SGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP
        SGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGEP
Subjt:  SGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP

A0A6J1D301 Mediator of RNA polymerase II transcription subunit 91.4e-5492.67Show/hide
Query:  QLQPQHFPQQQQQQQQQQQYHF---QQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQL
        QLQPQHFP   QQQQQQQQYHF   QQQQQQRLLQQQQQQQ+QQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALV+DLNNHFEKCQQL
Subjt:  QLQPQHFPQQQQQQQQQQQYHF---QQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQL

Query:  LNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
        LNSISGSLSSKAMTV+GQKKKLEEH+QLLNHRRELIGKYKNSVEELVKG+
Subjt:  LNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE

A0A6J1FZC2 mediator of RNA polymerase II transcription subunit 9-like5.3e-5493.24Show/hide
Query:  QLQPQHFP-QQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLN
        QLQPQHFP QQQQQQQQQQQYHFQQQ      QQQQQQQ+QQQQQQQQYHQHQSLASHFHLFHLVEKLAD IENGARDQQSDALV+DLNNHFEKCQQLLN
Subjt:  QLQPQHFP-QQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLN

Query:  SISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
        SISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
Subjt:  SISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE

A0A6J1GCY0 mediator of RNA polymerase II transcription subunit 9-like4.6e-5087.84Show/hide
Query:  QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNS
        Q+QPQHFPQQQQQQQQQQQ +  QQQQQRLLQQQQQQQ+     QQQYHQHQSLASHFHLFHLVEKLADAIE G RDQQSDALV+DLNNHFEKCQQLLNS
Subjt:  QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNS

Query:  ISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP
        ISGSLSSKAMTVEGQKKKLEEHEQLL++RRELIGKYK+SVEEL KGEP
Subjt:  ISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP

A0A6J1K651 mediator of RNA polymerase II transcription subunit 9-like3.2e-5189.86Show/hide
Query:  QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNS
        Q+QPQHFP QQQQQQQQQQYHF QQQQQRLLQQQQQQQ+     QQQYHQHQSLASHFHLFHLVEKLADAIE G RDQQSDALV+DLNNHFEKCQQLLNS
Subjt:  QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNS

Query:  ISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP
        ISGSLSSKAMTVEGQKKKLEEHEQLL++RRELIGKYK+SVEELVKGEP
Subjt:  ISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP

SwissProt top hitse value%identityAlignment
Q8RWA2 Mediator of RNA polymerase II transcription subunit 91.7e-2555.06Show/hide
Query:  QLQPQHFPQQQQQQQQQQQYHF----QQQQQQRLLQQ---------------------------QQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLAD
        Q QPQ   + QQ QQ QQQ HF    Q QQQQRLLQ                             QQQQ+  Q   Q   QHQSLASHFHL+ +VEKLAD
Subjt:  QLQPQHFPQQQQQQQQQQQYHF----QQQQQQRLLQQ---------------------------QQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLAD

Query:  AIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
         IENG RDQ SDALV++LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Subjt:  AIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE

Arabidopsis top hitse value%identityAlignment
AT1G29580.1 unknown protein7.4e-0844.92Show/hide
Query:  LQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRR
        +Q+ Q    QQQQ  Q   QHQ+LAS  HL+ LVE L D  E+ ARDQ SDAL  D+                           QK+ LEE EQLL  R 
Subjt:  LQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRR

Query:  ELIGKYKNSVEELVKGEP
        ELI +YK SVEE+VK EP
Subjt:  ELIGKYKNSVEELVKGEP

AT1G55080.1 MED91.2e-2655.06Show/hide
Query:  QLQPQHFPQQQQQQQQQQQYHF----QQQQQQRLLQQ---------------------------QQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLAD
        Q QPQ   + QQ QQ QQQ HF    Q QQQQRLLQ                             QQQQ+  Q   Q   QHQSLASHFHL+ +VEKLAD
Subjt:  QLQPQHFPQQQQQQQQQQQYHF----QQQQQQRLLQQ---------------------------QQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLAD

Query:  AIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE
         IENG RDQ SDALV++LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Subjt:  AIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAATTGCAACCCCAACATTTCCCCCAGCAACAACAACAACAGCAGCAGCAGCAACAATATCATTTTCAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAACAGCA
GCAACGACAGCAGCAACAGCAACAGCAGCAATATCATCAACACCAATCTTTGGCTTCCCATTTTCATCTATTTCATCTAGTGGAGAAATTGGCGGATGCTATTGAGAATG
GAGCTAGAGATCAGCAGTCTGATGCATTGGTCCATGATCTGAATAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATG
ACAGTAGAGGGACAGAAGAAAAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGGAACTGATTGGCAAGTATAAGAACTCTGTTGAAGAGCTTGTAAAGGGTGA
GCCTTAA
mRNA sequenceShow/hide mRNA sequence
CAATTGCAACCCCAACATTTCCCCCAGCAACAACAACAACAGCAGCAGCAGCAACAATATCATTTTCAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAACAGCA
GCAACGACAGCAGCAACAGCAACAGCAGCAATATCATCAACACCAATCTTTGGCTTCCCATTTTCATCTATTTCATCTAGTGGAGAAATTGGCGGATGCTATTGAGAATG
GAGCTAGAGATCAGCAGTCTGATGCATTGGTCCATGATCTGAATAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATG
ACAGTAGAGGGACAGAAGAAAAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGGAACTGATTGGCAAGTATAAGAACTCTGTTGAAGAGCTTGTAAAGGGTGA
GCCTTAA
Protein sequenceShow/hide protein sequence
QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAM
TVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP