CuGenDBv2

Gene ID	Spg006308
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	mediator of RNA polymerase II transcription subunit 15a
Genome location	scaffold4:3517600..3520430
RNA-Seq Expression	Spg006308
Synteny	Spg006308
Gene Ontology terms	GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003713 - transcription coactivator activity (molecular function) GO:0031490 - chromatin DNA binding (molecular function)
InterPro domains	IPR036529 - Coactivator CBP, KIX domain superfamily IPR036546 - Mediator complex subunit 15, KIX domain IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588792.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]

8.6e-27

83.33

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        +R R V++ METLKRHLPVSGH+GLSELRKIAVRFEEKIYTAAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

KAG7022562.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.6e-27

83.33

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        +R R V++ METLKRHLPVSGH+GLSELRKIAVRFEEKIYTAAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

XP_022927757.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]

8.6e-27

83.33

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        +R R V++ METLKRHLPVSGH+GLSELRKIAVRFEEKIYTAAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

XP_022927758.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita moschata]

8.6e-27

83.33

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        +R R V++ METLKRHLPVSGH+GLSELRKIAVRFEEKIYTAAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

XP_022927759.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita moschata]

8.6e-27

83.33

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        +R R V++ METLKRHLPVSGH+GLSELRKIAVRFEEKIYTAAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EI34 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

4.2e-27

83.33

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        +R R V++ METLKRHLPVSGH+GLSELRKIAVRFEEKIYTAAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

A0A6J1EIW4 mediator of RNA polymerase II transcription subunit 15a-like isoform X3

4.2e-27

83.33

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        +R R V++ METLKRHLPVSGH+GLSELRKIAVRFEEKIYTAAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

A0A6J1ELX0 mediator of RNA polymerase II transcription subunit 15a-like isoform X2

4.2e-27

83.33

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        +R R V++ METLKRHLPVSGH+GLSELRKIAVRFEEKIYTAAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

A0A6J1EPV5 mediator of RNA polymerase II transcription subunit 15a-like isoform X4

9.3e-27

89.33

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Query:  METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        METLKRHLPVSGH+GLSELRKIAVRFEEKIYTAAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

A0A6J1JMY4 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

1.6e-26

82.14

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS
        +R R V++ METLKRHLPVSGH+GLSELRKIAVRFEEKIY AAT+QSDYLRKISLKMLTMETKSQTT + PSNS+VP NKP+DS
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDS

SwissProt top hits

e value

%identity

Alignment

F4I171 Mediator of RNA polymerase II transcription subunit 15a

3.8e-17

67.69

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQ
        +R + V++ METLK+HLP SG +G++ELR+IA RFEEKI++ A NQ+DYLRKIS+KMLTMETKSQ
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G15780.1 unknown protein

2.7e-18

67.69

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQ
        +R + V++ METLK+HLP SG +G++ELR+IA RFEEKI++ A NQ+DYLRKIS+KMLTMETKSQ
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQ

AT1G15790.1 unknown protein

1.8e-14

48.45

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQ-----------TTPMVPSNSLVPGNKPMDSDG
        +R R V++ MET  + LP    +G +ELRKIAVRFEEK++  A+NQ++YLR+I +KML METKSQ           T P+VP  S VP N+P  + G
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQ-----------TTPMVPSNSLVPGNKPMDSDG

AT1G15790.2 unknown protein

1.8e-14

48.45

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Query:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQ-----------TTPMVPSNSLVPGNKPMDSDG
        +R R V++ MET  + LP    +G +ELRKIAVRFEEK++  A+NQ++YLR+I +KML METKSQ           T P+VP  S VP N+P  + G
Subjt:  NRMRTVSR-METLKRHLPVSGHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQ-----------TTPMVPSNSLVPGNKPMDSDG

Sequences

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CDS sequence

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ATGCACCGTCCTCTTGCATGGCTTGCTAAATCATCTACGACCCTTTTGCAATCACACCAAATCTCTGAATTAGACCCCTCTTTTCCTGTAATCAGCTCCCAAACATTCGC
CGAATCGATTTCTCCTCGATTCCCATCTCCGCCGCCAAATTCAGGCCTTCATCGAGCCCTAAAGCTCCAGCAAACTCAAGCGGAACCATCAACTTTCGGGAATTTTTCGC
TGTCTCTTTTCGTCTCTCATAACGGTTTGAAATCCCCGACGATTATCTTTCACAATCGCATGCGAACTGTTTCCAGAATGGAGACATTGAAGAGGCACCTTCCTGTTTCT
GGTCATGATGGATTGAGTGAGCTGAGGAAGATTGCTGTAAGGTTTGAGGAAAAGATTTACACTGCCGCCACCAATCAGTCAGATTACCTGAGGAAAATTTCTCTGAAGAT
GCTGACTATGGAAACCAAATCTCAGACCACCCCTATGGTACCATCCAATTCTTTGGTGCCTGGCAATAAGCCTATGGATTCTGATGGGACACGACTCTTTGGGTGTGTTT
GGGACAAGGAGTTGGAGTTGTAA

mRNA sequence

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Protein sequence

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MHRPLAWLAKSSTTLLQSHQISELDPSFPVISSQTFAESISPRFPSPPPNSGLHRALKLQQTQAEPSTFGNFSLSLFVSHNGLKSPTIIFHNRMRTVSRMETLKRHLPVS
GHDGLSELRKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQTTPMVPSNSLVPGNKPMDSDGTRLFGCVWDKELEL

Spg006308 (gene) of Sponge gourd (cylindrica) v1 genome