; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006324 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006324
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold4:6293135..6294555
RNA-Seq ExpressionSpg006324
SyntenySpg006324
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.5e-6633.86Show/hide
Query:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW
        K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FK P S CK ++K  R FLW      + L  L++W  +T+ K+ GG  I + K +N AL  KW
Subjt:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW

Query:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA
        LWRY  ED PLWK+++NAKY     G +P     S+SR+PWFSI K    F++   W ++NG    FW   W  N  PL+  +PR FA S+ +D  + + 
Subjt:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA

Query:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSL---------PRPS---SSRGPFSTALAHLSFWD-SSSIMRLQVDLKVLTNLWRARILKKPL--------
        W ++   W++ PRR L + E  LW EL  SL           P+   +S G ++ A    +      S++ LQ       NLW+  I KK +        
Subjt:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSL---------PRPS---SSRGPFSTALAHLSFWD-SSSIMRLQVDLKVLTNLWRARILKKPL--------

Query:  ------------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQN
                                      +   H+F+ C +A +IW +I     +     S  D LC    ++K  ++++ ++   + ++ W IW E+N
Subjt:  ------------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQN

Query:  SRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
        +RIF  +  +  +IWEDI ALA   TS S+ F NY A SIALN
Subjt:  SRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-6432.82Show/hide
Query:  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGF
        LG  P    F   +L K   KL +W++S +SKGGR+TLI +TL S+  Y LSVFKVP+ I +K++   R FLW GTS  +N+  LI W+ V + K+ GG 
Subjt:  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGF

Query:  DIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHP
         I     +N AL  KWLW++  E +PLWKRL+ +KY   + G  P++ ++S++ +PW ++      F +   W + +G  I FW D+W+ N  PL+L+ P
Subjt:  DIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHP

Query:  RFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR---------LQVDLKVLTNLWRAR
        R FA S+ +   V + W  S   WNI   RPL D E +LW  +  SLP P   RGP      L   + +D++SI +               +   LW+  
Subjt:  RFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR---------LQVDLKVLTNLWRAR

Query:  ILK--------------------------------------KPLKSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQG
          K                                      K  + ++H+F+HC  +  +W+   QA    +  P+ V  L +   +    +Q+  +   
Subjt:  ILK--------------------------------------KPLKSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQG

Query:  LFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
              W IW E+N+RIFK Q      +WEDILA     +  S  F NYD  SIALN
Subjt:  LFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.7e-6434.65Show/hide
Query:  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGF
        LG NP+  LF   +  +   KL NW++++ISKGGRLTLI++TLSS+  Y LSVF+ P S  K ++KL R FLW G S       LI+W +VT  K+ GG 
Subjt:  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGF

Query:  DIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHP
         I + +V+N AL  KWLWRYY E   LW+RL++ KY     G LP+    S+S+APW SI+ +   FK    W L NG++I FW  +WS   G L+  +P
Subjt:  DIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHP

Query:  RFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGP------------FSTALAH--LSFWDSSSIMRLQVDLKVLTNLW
        R FA S  ++  + + W S++  W I  RR L DRE+S W +++ +LP   ++RGP            FS A A   +S     S+   +V  K+L  +W
Subjt:  RFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGP------------FSTALAH--LSFWDSSSIMRLQVDLKVLTNLW

Query:  RARI--------------------------------LKKPLKSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFV
        +  +                                 KK  ++  H+F+HC L   +W+ +L  S   +PI    + +     +      +  ++    +
Subjt:  RARI--------------------------------LKKPLKSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFV

Query:  ASFWVIWNEQNSRIFKNQSH--SPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
        A  W IW E+N+RIF   S+  S   +WED   L     S    F NY A +IALN
Subjt:  ASFWVIWNEQNSRIFKNQSH--SPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-6433.86Show/hide
Query:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW
        K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FK P S CK ++K  R FLW      + L  L++W  +T++K+ GG  I + K +N AL  KW
Subjt:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW

Query:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA
        LWRY  ED PLWK+++NAKY     G +P     S+SR+PWFSI K    F++   W ++NG    FW   W  N  PL+  +PR +A S+ ++  + + 
Subjt:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA

Query:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR-LQ------VDLK---VLTNLWRARILKKPL---------
        W ++   W++ PRR L + E+ LW EL  S+       G  S   AL     +  +S+ + LQ      +DL+      NLW+  I KK +         
Subjt:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR-LQ------VDLK---VLTNLWRARILKKPL---------

Query:  -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDK-LCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQN
                                     +   H+F+ C +A +IW  I  +S   S +     K LC    ++K  ++++ ++   + ++ W IW E+N
Subjt:  -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDK-LCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQN

Query:  SRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
        +RIF  +  +  +IWEDI ALA   TS S+ F NY A SIALN
Subjt:  SRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]5.2e-6433.56Show/hide
Query:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW
        K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FKVP S CK ++K  R FLW      + L  L++W  +T++K+ GG  I + K +N AL  KW
Subjt:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW

Query:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA
        LWRY  ED PLWK+++NAKY     G +P     S+SR+PWFSI K    F++   W ++NG    FW   W  N  PL+  +PR +A S+ ++  + + 
Subjt:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA

Query:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRG---PFSTALAHLSFWDSSSIMRLQ------VDLK---VLTNLWRARILKKPL---------
        W ++   W++ PRR L + E  LW EL  SL       G   P  T  ++  +  +S    LQ      +D +      NLW+  I KK +         
Subjt:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRG---PFSTALAHLSFWDSSSIMRLQ------VDLK---VLTNLWRARILKKPL---------

Query:  -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVD-----KLCEEAFAFKAGSQRSSLIQGLFVASFWVIW
                                     +   H+F+ C +A +IW  I       S + S V+     +LC    ++K  ++++ ++   + ++ W IW
Subjt:  -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVD-----KLCEEAFAFKAGSQRSSLIQGLFVASFWVIW

Query:  NEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
         E+N+RIF  +  +  +IWEDI ALA   TS S+ F NY A SIALN
Subjt:  NEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein2.5e-6433.56Show/hide
Query:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW
        K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FKVP S CK ++K  R FLW      + L  L++W  +T++K+ GG  I + K +N AL  KW
Subjt:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW

Query:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA
        LWRY  ED PLWK+++NAKY     G +P     S+SR+PWFSI K    F++   W ++NG    FW   W  N  PL+  +PR +A S+ ++  + + 
Subjt:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA

Query:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRG---PFSTALAHLSFWDSSSIMRLQ------VDLK---VLTNLWRARILKKPL---------
        W ++   W++ PRR L + E  LW EL  SL       G   P  T  ++  +  +S    LQ      +D +      NLW+  I KK +         
Subjt:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRG---PFSTALAHLSFWDSSSIMRLQ------VDLK---VLTNLWRARILKKPL---------

Query:  -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVD-----KLCEEAFAFKAGSQRSSLIQGLFVASFWVIW
                                     +   H+F+ C +A +IW  I       S + S V+     +LC    ++K  ++++ ++   + ++ W IW
Subjt:  -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVD-----KLCEEAFAFKAGSQRSSLIQGLFVASFWVIW

Query:  NEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
         E+N+RIF  +  +  +IWEDI ALA   TS S+ F NY A SIALN
Subjt:  NEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.3e-6432.17Show/hide
Query:  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGF
        LG  P    F   +L K   KL NW++S +SKGGR+TLI +TL S+  Y +SVFKVP+ I +K++   R FLW G S  +N+  LI W+ + + K+ GG 
Subjt:  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGF

Query:  DIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHP
         I     +N AL  KWLW++  E  PLWKRL+ +KY   + G+ P+  +FS++ +PW ++ +    F +   W + +G  I FW D+W+ N  PL+L  P
Subjt:  DIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHP

Query:  RFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFSTA--LAHLSFWDSSSIMRLQVDLKV---------LTNLWRAR
        R FA S+ +   V E W  SS  W++   RPL D E +LW  +  SLP P  +RG       L   + +D++S+ R   +  +            LW+  
Subjt:  RFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFSTA--LAHLSFWDSSSIMRLQVDLKV---------LTNLWRAR

Query:  ILK--------------------------------------KPLKSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQG
          K                                      K  + ++H+F+HC  +  +W+         S  P+ V  L +   +    +Q+  +   
Subjt:  ILK--------------------------------------KPLKSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQG

Query:  LFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
              W IW E+N+RIFK Q  +P  +WED LA     +  S  F NYD  SIALN
Subjt:  LFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein2.7e-6633.86Show/hide
Query:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW
        K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FK P S CK ++K  R FLW      + L  L++W  +T+ K+ GG  I + K +N AL  KW
Subjt:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW

Query:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA
        LWRY  ED PLWK+++NAKY     G +P     S+SR+PWFSI K    F++   W ++NG    FW   W  N  PL+  +PR FA S+ +D  + + 
Subjt:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA

Query:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSL---------PRPS---SSRGPFSTALAHLSFWD-SSSIMRLQVDLKVLTNLWRARILKKPL--------
        W ++   W++ PRR L + E  LW EL  SL           P+   +S G ++ A    +      S++ LQ       NLW+  I KK +        
Subjt:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSL---------PRPS---SSRGPFSTALAHLSFWD-SSSIMRLQVDLKVLTNLWRARILKKPL--------

Query:  ------------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQN
                                      +   H+F+ C +A +IW +I     +     S  D LC    ++K  ++++ ++   + ++ W IW E+N
Subjt:  ------------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQN

Query:  SRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
        +RIF  +  +  +IWEDI ALA   TS S+ F NY A SIALN
Subjt:  SRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.1e-6432.82Show/hide
Query:  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGF
        LG  P    F   +L K   KL +W++S +SKGGR+TLI +TL S+  Y LSVFKVP+ I +K++   R FLW GTS  +N+  LI W+ V + K+ GG 
Subjt:  LGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGF

Query:  DIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHP
         I     +N AL  KWLW++  E +PLWKRL+ +KY   + G  P++ ++S++ +PW ++      F +   W + +G  I FW D+W+ N  PL+L+ P
Subjt:  DIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHP

Query:  RFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR---------LQVDLKVLTNLWRAR
        R FA S+ +   V + W  S   WNI   RPL D E +LW  +  SLP P   RGP      L   + +D++SI +               +   LW+  
Subjt:  RFFAFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR---------LQVDLKVLTNLWRAR

Query:  ILK--------------------------------------KPLKSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQG
          K                                      K  + ++H+F+HC  +  +W+   QA    +  P+ V  L +   +    +Q+  +   
Subjt:  ILK--------------------------------------KPLKSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQG

Query:  LFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
              W IW E+N+RIFK Q      +WEDILA     +  S  F NYD  SIALN
Subjt:  LFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein8.6e-6533.86Show/hide
Query:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW
        K + KL +W++S +SKGG++TLI+++L+S+ TY LS+FK P S CK ++K  R FLW      + L  L++W  +T++K+ GG  I + K +N AL  KW
Subjt:  KFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNALQIKW

Query:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA
        LWRY  ED PLWK+++NAKY     G +P     S+SR+PWFSI K    F++   W ++NG    FW   W  N  PL+  +PR +A S+ ++  + + 
Subjt:  LWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFFAFSSRQDMKVFEA

Query:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR-LQ------VDLK---VLTNLWRARILKKPL---------
        W ++   W++ PRR L + E+ LW EL  S+       G  S   AL     +  +S+ + LQ      +DL+      NLW+  I KK +         
Subjt:  WVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFST--ALAHLSFWDSSSIMR-LQ------VDLK---VLTNLWRARILKKPL---------

Query:  -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDK-LCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQN
                                     +   H+F+ C +A +IW  I  +S   S +     K LC    ++K  ++++ ++   + ++ W IW E+N
Subjt:  -----------------------------KSLDHIFVHCRLASTIWTIILQASGARSPIPSQVDK-LCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQN

Query:  SRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN
        +RIF  +  +  +IWEDI ALA   TS S+ F NY A SIALN
Subjt:  SRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.1e-1931.55Show/hide
Query:  QLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNAL
        ++L + S ++  WR   +S  GRLTL +A LSS+  + +S   +PQSI  ++D+L RTFLW G++ +   + L+ W  V + K  GG  +   K  N AL
Subjt:  QLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAKDSGGFDIFKTKVSNNAL

Query:  QIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFS-----------IVKHAHHFKQFTKWGLRNGNKIFFWQDSW
          K  WR  QE   LW  ++  KY + +       SR+   +  W S           +V H         W   +G +I FW D W
Subjt:  QIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFS-----------IVKHAHHFKQFTKWGLRNGNKIFFWQDSW

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein8.9e-1426.29Show/hide
Query:  LWAPLLGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAK
        L  PLL        +GP L+ K  V++  W   ++S  GRL LI + + S++ + +S F++P +  K++D +  +FLW G  + N  +  ++W  V   K
Subjt:  LWAPLLGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTAAK

Query:  DSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWS
        D GG  I   K +N                  W   ++   T+                  W  I+KH      F K  + NG+   FW D+WS
Subjt:  DSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGT
AAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCC
CTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCC
GCAAAAGACTCAGGGGGCTTTGATATTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACG
CCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATT
TCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTT
GCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTG
GGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGG
TGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGAAATCCTTGGATCATATTTTCGTTCATTGCCGGTTGGCCTCAACCATTTGGACT
ATAATTCTTCAAGCCTCTGGTGCTCGTTCTCCAATCCCTTCTCAAGTTGACAAGCTTTGTGAGGAGGCTTTTGCTTTCAAGGCTGGCTCTCAAAGGAGCTCTCTCATCCA
AGGTCTGTTTGTGGCTTCTTTTTGGGTTATTTGGAATGAGCAGAATAGTCGTATCTTCAAAAATCAATCTCACTCTCCTTATCAGATTTGGGAGGATATCCTTGCTTTAG
CGGTTTTTGGGACCTCTTCTTCTACGTTTTTTATCAACTATGATGCGCCTTCCATTGCCCTTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTGCCCCCATTCTCCCCTTCCGATCTCCTACTTTGGGCACCCCTCTTGGGGATAAACCCTCAAATGCTTCTTTTTGGTCCCCAATTATTGATAAAATTCAGCGT
AAAGCTTGAAAATTGGCGTTTCTCATATATTTCGAAGGGCGGTCGTTTAACTCTTATTCAAGCAACTCTGAGTAGTATCTCAACGTACATGCTGTCAGTTTTTAAGGTCC
CTCAGTCTATTTGTAAGAAGGTGGATAAGCTTATCAGAACTTTCCTTTGGTGTGGTACTAGCGTTGATAACAACCTCCGGCCTTTGATTAGTTGGGATGTGGTGACTGCC
GCAAAAGACTCAGGGGGCTTTGATATTTTCAAAACCAAAGTTTCAAATAATGCCCTTCAAATCAAATGGTTGTGGAGGTACTATCAGGAGGATCAACCCTTATGGAAACG
CCTTGTTAATGCCAAATATACTATCCCACAAGCTGGAGCTCTCCCAACGCAGTCCCGTTTCTCCAATTCTAGGGCCCCTTGGTTTTCTATTGTCAAGCATGCTCATCATT
TCAAGCAGTTCACTAAATGGGGCCTCAGAAATGGAAATAAAATTTTCTTTTGGCAAGATTCTTGGTCAAATAATCTAGGCCCGTTAAACCTGCTTCATCCTCGTTTCTTT
GCGTTTTCCAGTAGGCAGGATATGAAAGTCTTTGAGGCTTGGGTGTCTTCTTCATATTCTTGGAATATTTTCCCTCGTAGACCTCTTCTGGACAGAGAGGTTAGCCTTTG
GGACGAGTTAATCCCCTCACTGCCCAGACCCTCTTCTTCTAGAGGGCCTTTCTCAACGGCTTTAGCTCACCTCTCTTTCTGGGATAGCTCTTCTATCATGCGCTTACAGG
TGGACCTTAAAGTCCTCACAAACCTTTGGCGAGCCAGAATCCTTAAGAAACCTTTGAAATCCTTGGATCATATTTTCGTTCATTGCCGGTTGGCCTCAACCATTTGGACT
ATAATTCTTCAAGCCTCTGGTGCTCGTTCTCCAATCCCTTCTCAAGTTGACAAGCTTTGTGAGGAGGCTTTTGCTTTCAAGGCTGGCTCTCAAAGGAGCTCTCTCATCCA
AGGTCTGTTTGTGGCTTCTTTTTGGGTTATTTGGAATGAGCAGAATAGTCGTATCTTCAAAAATCAATCTCACTCTCCTTATCAGATTTGGGAGGATATCCTTGCTTTAG
CGGTTTTTGGGACCTCTTCTTCTACGTTTTTTATCAACTATGATGCGCCTTCCATTGCCCTTAATTAG
Protein sequenceShow/hide protein sequence
MGLPPFSPSDLLLWAPLLGINPQMLLFGPQLLIKFSVKLENWRFSYISKGGRLTLIQATLSSISTYMLSVFKVPQSICKKVDKLIRTFLWCGTSVDNNLRPLISWDVVTA
AKDSGGFDIFKTKVSNNALQIKWLWRYYQEDQPLWKRLVNAKYTIPQAGALPTQSRFSNSRAPWFSIVKHAHHFKQFTKWGLRNGNKIFFWQDSWSNNLGPLNLLHPRFF
AFSSRQDMKVFEAWVSSSYSWNIFPRRPLLDREVSLWDELIPSLPRPSSSRGPFSTALAHLSFWDSSSIMRLQVDLKVLTNLWRARILKKPLKSLDHIFVHCRLASTIWT
IILQASGARSPIPSQVDKLCEEAFAFKAGSQRSSLIQGLFVASFWVIWNEQNSRIFKNQSHSPYQIWEDILALAVFGTSSSTFFINYDAPSIALN