; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006373 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006373
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationscaffold4:6053059..6055630
RNA-Seq ExpressionSpg006373
SyntenySpg006373
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144523.1 uncharacterized protein At4g28440 [Cucumis sativus]4.2e-6579.19Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]8.5e-6680.35Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_022136009.1 uncharacterized protein At4g28440-like [Momordica charantia]1.7e-6682.08Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MATA VNAPAKRKPVFIKVEELKPGTSGHTL VKVVSSKNVK+VNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]1.6e-6479.77Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MAT  VNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRSAM TARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]2.9e-6680.92Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MAT  VNAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein2.1e-6579.19Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284404.1e-6680.35Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein4.1e-6680.35Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1C327 uncharacterized protein At4g28440-like8.3e-6782.08Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MATA VNAPAKRKPVFIKVEELKPGTSGHTL VKVVSSKNVK+VNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like7.8e-6579.77Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MAT  VNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRSAM TARPQQLTRISECLVGDETGSIVFTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
                   VD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284407.3e-4456.47Show/hide
Query:  ATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPA
        A AT  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ +  V  V +  R A   +RP Q +RI ECL+GDETG I+FTARNDQ                  
Subjt:  ATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPA

Query:  LIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV
                  VD+MKPG TV LRN++IDMFKG+MRL VDKWGRIE    A+F VKEDNNLSLVEYEL+NV
Subjt:  LIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein2.5e-3955.49Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MA AT    A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA-EPANFEVKEDNNLSLVEYELVNVE
                   VD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGR+EVA EP +  VK+DNNLSL+EYELV+VE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA-EPANFEVKEDNNLSLVEYELVNVE

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein2.5e-3955.49Show/hide
Query:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP
        MA AT    A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQ                 
Subjt:  MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEP

Query:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA-EPANFEVKEDNNLSLVEYELVNVE
                   VD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGR+EVA EP +  VK+DNNLSL+EYELV+VE
Subjt:  ALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA-EPANFEVKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein7.8e-4156.79Show/hide
Query:  RKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYL
        +KP F KV++L+PGTSGH + VK+VS+   K+V + GR+    AR     RISEC+VGDETG IVFTARNDQ                            
Subjt:  RKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYL

Query:  VDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        VD+MK G+TVTLRNAKIDM+KGSMRLAVDKWGR+EV EPA+F+VKED N+SL+EYELVNV E
Subjt:  VDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein3.7e-4360.12Show/hide
Query:  KRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRY
        K+KPVF+KV++LKPGTSGHTLTVKVV   +V    K G ++    RP    RISECLVGDET  I+FTARNDQ                           
Subjt:  KRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRY

Query:  LVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
         V++MKPG TV LRNAKIDMFKGSMRLAVDKWGRIE  EPA+  VKEDNNLSLVEYELVNV E
Subjt:  LVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein5.2e-4556.47Show/hide
Query:  ATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPA
        A AT  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ +  V  V +  R A   +RP Q +RI ECL+GDETG I+FTARNDQ                  
Subjt:  ATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPA

Query:  LIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV
                  VD+MKPG TV LRN++IDMFKG+MRL VDKWGRIE    A+F VKEDNNLSLVEYEL+NV
Subjt:  LIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGCAACAGTGAATGCCCCTGCAAAGAGGAAGCCTGTCTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTTGTGAG
CTCCAAAAATGTCAAGGTGGTCAATAAAGGTGGACGATCCGCCATGCTTACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAGACTGGTT
CCATCGTCTTCACAGCTCGAAACGACCAAGAACCTATGGCAATCCATTTGTGGGTTTGGGTGGAAGAGGACAAGGAACCAGCCCTTATTCACAGTCATCTTGTTCGTTAT
CTTGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGT
TGCTGAACCAGCTAACTTTGAAGTTAAAGAAGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTCGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGGCAACAGTGAATGCCCCTGCAAAGAGGAAGCCTGTCTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTTGTGAG
CTCCAAAAATGTCAAGGTGGTCAATAAAGGTGGACGATCCGCCATGCTTACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAGACTGGTT
CCATCGTCTTCACAGCTCGAAACGACCAAGAACCTATGGCAATCCATTTGTGGGTTTGGGTGGAAGAGGACAAGGAACCAGCCCTTATTCACAGTCATCTTGTTCGTTAT
CTTGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGT
TGCTGAACCAGCTAACTTTGAAGTTAAAGAAGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTCGAAGAGTGA
Protein sequenceShow/hide protein sequence
MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRY
LVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE