; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006398 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006398
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:47119777..47125359
RNA-Seq ExpressionSpg006398
SyntenySpg006398
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-1962.77Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +S+A  EE NQC MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K   E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-1862.77Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +SI   EE NQC  ST TR SAF+ LS+STSKK +PSTS FDRLK+ +DQ +R+M +L+VK   E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.5e-1962.77Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +S+A  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K   E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]7.5e-1962.77Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +S+A  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K   E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-1861.7Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +S+A  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K   E N D K+H+ VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.1e-1962.77Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +S+A  EE NQC MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K   E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

A0A5A7TGM1 Retrotransposon gag protein6.2e-1962.77Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +SI   EE NQC  ST TR SAF+ LS+STSKK +PSTS FDRLK+ +DQ +R+M +L+VK   E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

A0A5A7TQ06 Retrotransposon gag protein3.6e-1962.77Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +S+A  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K   E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

A0A5A7UI09 Retrotransposon gag protein8.0e-1961.7Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +S+A  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K   E N D K+H+ VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

A0A5D3BBF9 Gag protease polyprotein3.6e-1962.77Show/hide
Query:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL
        +S+A  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K   E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATAGCCGCGACAGAAGAAGGAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
AACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAATCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTAGATGAAGTAAACAGCGACAAGAAGCTTCATA
GTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTTTCATAACTACAGAAGGTTCCTTGAAGTTCCTTCTCTCCAAATTCGAGAAGGTTCTCATGCGTTTCGCTGCA
GTTCCTTCTCCCCAAGTTCGAAGGTTCTCATCCCAGTTCCCAGTTTCCTTCCTCCAAGTTCGAAGGTTCTCATCCCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATCC
GCTTCGCTGCAGTTATTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGTGGGTTCTTACGATGTACGCTACTTGTGTTGTTCCCTCTTCTTCAAGTTCAAAGGTGA
GCGCGCTTCGCTGGAGTTCCTTCTCTCCAAATTCGAAGGTTCTCATGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCATTTGCT
TCGTTCGAAGGTTCTCATCCCAGTTCCTTCTCCCCCAAGTTCGAAGGTTCTCACGTTGTTTCGCTTTTCCTTCCTCCAAGTTCGAAGGTTCTCATCCCAGTTTCCTTCTC
CCCAAGTTCGAAGGCAAATCTGGTGACCACCCCTGTAGGAAACTACAATCATCAAAGTGACTGGTCTAGACATGTGGTGAAATCACTACAAGAGAAGTTGATGACGACCG
TGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTACAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGA
AACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACAACAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGA
CTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATAGCCGCGACAGAAGAAGGAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
AACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAATCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTAGATGAAGTAAACAGCGACAAGAAGCTTCATA
GTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTTTCATAACTACAGAAGGTTCCTTGAAGTTCCTTCTCTCCAAATTCGAGAAGGTTCTCATGCGTTTCGCTGCA
GTTCCTTCTCCCCAAGTTCGAAGGTTCTCATCCCAGTTCCCAGTTTCCTTCCTCCAAGTTCGAAGGTTCTCATCCCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATCC
GCTTCGCTGCAGTTATTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGTGGGTTCTTACGATGTACGCTACTTGTGTTGTTCCCTCTTCTTCAAGTTCAAAGGTGA
GCGCGCTTCGCTGGAGTTCCTTCTCTCCAAATTCGAAGGTTCTCATGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCATTTGCT
TCGTTCGAAGGTTCTCATCCCAGTTCCTTCTCCCCCAAGTTCGAAGGTTCTCACGTTGTTTCGCTTTTCCTTCCTCCAAGTTCGAAGGTTCTCATCCCAGTTTCCTTCTC
CCCAAGTTCGAAGGCAAATCTGGTGACCACCCCTGTAGGAAACTACAATCATCAAAGTGACTGGTCTAGACATGTGGTGAAATCACTACAAGAGAAGTTGATGACGACCG
TGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTACAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGA
AACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACAACAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGA
CTGA
Protein sequenceShow/hide protein sequence
MSIAATEEGNQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQSKRKMDNLEVKLLDEVNSDKKLHSSVPSRMKRKFSVFITTEGSLKFLLSKFEKVLMRFAA
VPSPQVRRFSSQFPVSFLQVRRFSSQFLLPKFEGSHPLRCSYSSKFEGSHVASLWVLTMYATCVVPSSSSSKVSALRWSSFSPNSKVLMRFAAVPSPQVRRFSRCFAAFA
SFEGSHPSSFSPKFEGSHVVSLFLPPSSKVLIPVSFSPSSKANLVTTPVGNYNHQSDWSRHVVKSLQEKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAG
NYSHQSDWSRQVVKSQQVKLMTTVVTTPAGNYSHQSD