; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006424 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006424
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUPF0496 protein 4-like
Genome locationscaffold2:47310018..47310493
RNA-Seq ExpressionSpg006424
SyntenySpg006424
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593278.1 Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.2e-1142.96Show/hide
Query:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----
        +VSS LNQLLLSS D   LSF WLLQL           AKLVVDL+ PV KWGADL    L  ++     L S         NS L     Y   +    
Subjt:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----

Query:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK
                  IV K +F GLEN+G V D+KKG SG+E AI++
Subjt:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK

KAG7025628.1 Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-1142.25Show/hide
Query:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----
        +VSS LNQLLLSS D + LSF WLLQL           AKLVVDL+ PV KWGADL    L  ++     L S         NS L     Y   +    
Subjt:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----

Query:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK
                  IV K +F G+EN+G V D+KKG SG+E AI++
Subjt:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK

XP_022960422.1 protein BPS1, chloroplastic-like [Cucurbita moschata]2.4e-1042.25Show/hide
Query:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----
        +VSS LNQLLLSS D   LSF WLLQL           AKLVVDL+ PV KWGADL    L  ++     L S         NS L     Y   +    
Subjt:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----

Query:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK
                  IV K +F GLEN+G V D+KKG S +E AI++
Subjt:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK

XP_023514538.1 protein BPS1, chloroplastic-like [Cucurbita pepo subsp. pepo]8.2e-1142.96Show/hide
Query:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----
        +VSS LNQLLLSS D   LSF WLLQL           AKLVVDL+ PV KWGADL    L  ++     L S         NS L     Y   +    
Subjt:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----

Query:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK
                  IV K +F GLEN+G V D+KKG SG+E AI++
Subjt:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK

XP_038896303.1 protein BPS1, chloroplastic-like [Benincasa hispida]3.0e-1345.71Show/hide
Query:  VSSWLNQLLLSSFDLKLLSFQWLLQL------------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEPNSELPFNGGYPS-------------
        VSS LNQLLLS+ DLK LSF+WLLQL            AKLVVDLEYPV KWGADL    L  ++     L S   S         S             
Subjt:  VSSWLNQLLLSSFDLKLLSFQWLLQL------------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEPNSELPFNGGYPS-------------

Query:  -EIS----IVPKTSFRGLENKGTVRDQKKGCSGKELAIDK
          +S    IV K SF G E +G V+DQKKGCS +E AI+K
Subjt:  -EIS----IVPKTSFRGLENKGTVRDQKKGCSGKELAIDK

TrEMBL top hitse value%identityAlignment
A0A1S4E356 UPF0496 protein 4-like2.7e-0738.57Show/hide
Query:  VSSWLNQLLLSSFDLKLLSFQWLLQL------------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEPNSELPFNGGYPS---EISIVP----
        VS+ LN LLLS+   K LSF +LLQL            AKLVVDLEYPV +W ADL    L  ++     L S   S         S    +S++     
Subjt:  VSSWLNQLLLSSFDLKLLSFQWLLQL------------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEPNSELPFNGGYPS---EISIVP----

Query:  -----------KTSFRGLENKGTVRDQKKGCSGKELAIDK
                   K    GLE +G V+D KKGCSG+E AI+K
Subjt:  -----------KTSFRGLENKGTVRDQKKGCSGKELAIDK

A0A5D3CEU0 UPF0496 protein 4-like2.7e-0738.57Show/hide
Query:  VSSWLNQLLLSSFDLKLLSFQWLLQL------------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEPNSELPFNGGYPS---EISIVP----
        VS+ LN LLLS+   K LSF +LLQL            AKLVVDLEYPV +W ADL    L  ++     L S   S         S    +S++     
Subjt:  VSSWLNQLLLSSFDLKLLSFQWLLQL------------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEPNSELPFNGGYPS---EISIVP----

Query:  -----------KTSFRGLENKGTVRDQKKGCSGKELAIDK
                   K    GLE +G V+D KKGCSG+E AI+K
Subjt:  -----------KTSFRGLENKGTVRDQKKGCSGKELAIDK

A0A6J1H7D5 protein BPS1, chloroplastic-like1.2e-1042.25Show/hide
Query:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----
        +VSS LNQLLLSS D   LSF WLLQL           AKLVVDL+ PV KWGADL    L  ++     L S         NS L     Y   +    
Subjt:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----

Query:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK
                  IV K +F GLEN+G V D+KKG S +E AI++
Subjt:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK

A0A6J1JX95 UPF0496 protein 4-like4.1e-0841.01Show/hide
Query:  VSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRS-------------EPNSELPFNGGYPSE
        VSS LNQ LLSS DL+ LSF WLLQL           AKLV +LE+PV KWGA L    L  ++     L S               +  L      PS 
Subjt:  VSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRS-------------EPNSELPFNGGYPSE

Query:  I-----SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK
               IVP   F  L   GTV DQKKG S KE A++K
Subjt:  I-----SIVPKTSFRGLENKGTVRDQKKGCSGKELAIDK

A0A6J1KTC2 protein BPS1, chloroplastic-like2.0e-1041.84Show/hide
Query:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----
        +VSS LNQLLL S D   LSF WLLQL           +KLVVDL+ PV KWGADL    L  ++     L S         NS L     Y   +    
Subjt:  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEP-------NSELPFNGGYPSEI----

Query:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAID
                  IV K +F GLEN+G V D+KK CSG+E AI+
Subjt:  ---------SIVPKTSFRGLENKGTVRDQKKGCSGKELAID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATTCCAGCCCCTAGTTATAATGGTCCTTTTGTTTCATTCCTTCAACAAGCTCTGTTCCAAGCTCGACAATCACCACAAGTCTCGTCTTGGCTGAATCAACTCTT
GTTGTCGAGTTTCGATTTGAAATTGTTGTCGTTTCAATGGCTTCTTCAGCTTGCAAAATTGGTTGTTGATTTGGAGTACCCCGTCGAGAAATGGGGAGCCGATTTGTTTT
TCTCTATCCTAATTGGCGCCATCGCGACTTTCCCTTTCTTACGCTCTGAGCCTAATTCAGAGCTCCCTTTTAATGGTGGTTACCCATCTGAAATTTCGATTGTCCCGAAG
ACAAGTTTCAGAGGATTGGAAAACAAAGGAACTGTGAGAGATCAAAAGAAGGGTTGCTCCGGCAAGGAGTTGGCGATCGATAAAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAATTCCAGCCCCTAGTTATAATGGTCCTTTTGTTTCATTCCTTCAACAAGCTCTGTTCCAAGCTCGACAATCACCACAAGTCTCGTCTTGGCTGAATCAACTCTT
GTTGTCGAGTTTCGATTTGAAATTGTTGTCGTTTCAATGGCTTCTTCAGCTTGCAAAATTGGTTGTTGATTTGGAGTACCCCGTCGAGAAATGGGGAGCCGATTTGTTTT
TCTCTATCCTAATTGGCGCCATCGCGACTTTCCCTTTCTTACGCTCTGAGCCTAATTCAGAGCTCCCTTTTAATGGTGGTTACCCATCTGAAATTTCGATTGTCCCGAAG
ACAAGTTTCAGAGGATTGGAAAACAAAGGAACTGTGAGAGATCAAAAGAAGGGTTGCTCCGGCAAGGAGTTGGCGATCGATAAAAAGTAG
Protein sequenceShow/hide protein sequence
MQIPAPSYNGPFVSFLQQALFQARQSPQVSSWLNQLLLSSFDLKLLSFQWLLQLAKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEPNSELPFNGGYPSEISIVPK
TSFRGLENKGTVRDQKKGCSGKELAIDKK