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Spg006431 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006431
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPseudouridine synthase
Genome locationscaffold2:49419373..49425994
RNA-Seq ExpressionSpg006431
SyntenySpg006431
Gene Ontology termsGO:0000455 - enzyme-directed rRNA pseudouridine synthesis (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domainsIPR036986 - RNA-binding S4 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142903.1 RNA pseudouridine synthase 2, chloroplastic isoform X1 [Momordica charantia]3.2e-1488Show/hide
Query:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
        MRLEEI DVNSGK+RLDSWISCRI+GISRARVQSSIR  LV+VNGRVIDK
Subjt:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
XP_022142905.1 RNA pseudouridine synthase 2, chloroplastic isoform X2 [Momordica charantia]3.2e-1488Show/hide
Query:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
        MRLEEI DVNSGK+RLDSWISCRI+GISRARVQSSIR  LV+VNGRVIDK
Subjt:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
XP_022142906.1 RNA pseudouridine synthase 2, chloroplastic isoform X3 [Momordica charantia]3.2e-1488Show/hide
Query:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
        MRLEEI DVNSGK+RLDSWISCRI+GISRARVQSSIR  LV+VNGRVIDK
Subjt:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
XP_022143616.1 uncharacterized protein LOC111013476 [Momordica charantia]8.5e-1540.85Show/hide
Query:  KNKLSRSKLPFNHCARTKSFLSHREDNEKMVALTQEQASSSTPMDADEVMATVLGKRPSYVKGMGYGPQPSRSQ--KTNYSQEYVQSLETHLVRTEECLE
        KNK++RSKL FNH    K F  HRED+E+M+ L    AS       +E+M TVLGKR +YV GMGYGP+P+R++   + YS EYV+SLE  L + EE   
Subjt:  KNKLSRSKLPFNHCARTKSFLSHREDNEKMVALTQEQASSSTPMDADEVMATVLGKRPSYVKGMGYGPQPSRSQ--KTNYSQEYVQSLETHLVRTEECLE

Query:  NQVREMKESESRVKEQMKEQMEELLAMQRQEYERRFSQMNEI
                    +    +EQ+++ L  Q QE+ R+  +M ++
Subjt:  NQVREMKESESRVKEQMKEQMEELLAMQRQEYERRFSQMNEI
XP_022148911.1 uncharacterized protein LOC111017461 [Momordica charantia]8.5e-1538.75Show/hide
Query:  KNKLSRSKLPFNHCARTKSFLSHREDNEKMVALTQEQASSSTPMDADEVMATVLGKRPSYVKGMGYGPQPSRSQ--KTNYSQEYVQSLETHLVRTEECLE
        KNK++RSKL FNH    K F  HRED+E+M+ L    AS       +E+M TVLGKR +YV GMGYGP+P+R++   + YS EYV+SLE  L + EE   
Subjt:  KNKLSRSKLPFNHCARTKSFLSHREDNEKMVALTQEQASSSTPMDADEVMATVLGKRPSYVKGMGYGPQPSRSQ--KTNYSQEYVQSLETHLVRTEECLE

Query:  NQVREMKESESRVKEQMKEQMEELLAMQRQEYERRFSQMNEILERFIRANPSVRKPPSCR
                    +    +EQ+++ L  Q QE+ R+  +M ++   F+    S      CR
Subjt:  NQVREMKESESRVKEQMKEQMEELLAMQRQEYERRFSQMNEILERFIRANPSVRKPPSCR
TrEMBL top hitse value%identityAlignment
A0A6J1CM88 RNA pseudouridine synthase 2, chloroplastic isoform X21.6e-1488Show/hide
Query:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
        MRLEEI DVNSGK+RLDSWISCRI+GISRARVQSSIR  LV+VNGRVIDK
Subjt:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
A0A6J1CMS3 Pseudouridine synthase1.6e-1488Show/hide
Query:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
        MRLEEI DVNSGK+RLDSWISCRI+GISRARVQSSIR  LV+VNGRVIDK
Subjt:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
A0A6J1CNK7 RNA pseudouridine synthase 2, chloroplastic isoform X31.6e-1488Show/hide
Query:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
        MRLEEI DVNSGK+RLDSWISCRI+GISRARVQSSIR  LV+VNGRVIDK
Subjt:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
A0A6J1CQT5 uncharacterized protein LOC1110134764.1e-1540.85Show/hide
Query:  KNKLSRSKLPFNHCARTKSFLSHREDNEKMVALTQEQASSSTPMDADEVMATVLGKRPSYVKGMGYGPQPSRSQ--KTNYSQEYVQSLETHLVRTEECLE
        KNK++RSKL FNH    K F  HRED+E+M+ L    AS       +E+M TVLGKR +YV GMGYGP+P+R++   + YS EYV+SLE  L + EE   
Subjt:  KNKLSRSKLPFNHCARTKSFLSHREDNEKMVALTQEQASSSTPMDADEVMATVLGKRPSYVKGMGYGPQPSRSQ--KTNYSQEYVQSLETHLVRTEECLE

Query:  NQVREMKESESRVKEQMKEQMEELLAMQRQEYERRFSQMNEI
                    +    +EQ+++ L  Q QE+ R+  +M ++
Subjt:  NQVREMKESESRVKEQMKEQMEELLAMQRQEYERRFSQMNEI
A0A6J1D6S9 uncharacterized protein LOC1110174614.1e-1538.75Show/hide
Query:  KNKLSRSKLPFNHCARTKSFLSHREDNEKMVALTQEQASSSTPMDADEVMATVLGKRPSYVKGMGYGPQPSRSQ--KTNYSQEYVQSLETHLVRTEECLE
        KNK++RSKL FNH    K F  HRED+E+M+ L    AS       +E+M TVLGKR +YV GMGYGP+P+R++   + YS EYV+SLE  L + EE   
Subjt:  KNKLSRSKLPFNHCARTKSFLSHREDNEKMVALTQEQASSSTPMDADEVMATVLGKRPSYVKGMGYGPQPSRSQ--KTNYSQEYVQSLETHLVRTEECLE

Query:  NQVREMKESESRVKEQMKEQMEELLAMQRQEYERRFSQMNEILERFIRANPSVRKPPSCR
                    +    +EQ+++ L  Q QE+ R+  +M ++   F+    S      CR
Subjt:  NQVREMKESESRVKEQMKEQMEELLAMQRQEYERRFSQMNEILERFIRANPSVRKPPSCR
SwissProt top hitse value%identityAlignment
Q3ECD0 RNA pseudouridine synthase 2, chloroplastic1.3e-1372Show/hide
Query:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
        +R+EEI D   GK+RLDSWIS RI+G+SRARVQSSIR+ LV+VNGRV+DK
Subjt:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
Q5Z8P2 RNA pseudouridine synthase 2, chloroplastic1.5e-0652.94Show/hide
Query:  RLEEIADVNSGKVRLDSWISCRI--DGISRARVQSSIRIELVSVNGRVIDK
        RLEE      G+ R+D+WIS R+   G+SRAR+Q+SIR  LV VNGR + K
Subjt:  RLEEIADVNSGKVRLDSWISCRI--DGISRARVQSSIRIELVSVNGRVIDK
Arabidopsis top hitse value%identityAlignment
AT1G76050.1 Pseudouridine synthase family protein9.1e-1572Show/hide
Query:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
        +R+EEI D   GK+RLDSWIS RI+G+SRARVQSSIR+ LV+VNGRV+DK
Subjt:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
AT1G76050.2 Pseudouridine synthase family protein9.1e-1572Show/hide
Query:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK
        +R+EEI D   GK+RLDSWIS RI+G+SRARVQSSIR+ LV+VNGRV+DK
Subjt:  MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGGAAGAGATCGCGGACGTAAATTCCGGTAAAGTTCGTCTTGATTCTTGGATATCTTGCCGCATTGACGGCATTAGTAGGGCTCGTGTGCAGTCCAGTATTAG
GATCGAACTAGTTTCAGTTAATGGTCGAGTTATTGATAAGGATACCCCCACTCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATTGAATACAAAGTGGG
TCGTATCTCATAGTGTCACCAGGATAAGGACAAGTCAGAAAAAAAATAAACTTAGTCGTAGCAAGCTACCTTTCAACCATTGTGCTAGAACGAAATCTTTTCTTTCTCAT
AGAGAAGATAATGAAAAAATGGTAGCATTGACCCAAGAGCAAGCCAGCTCGAGTACACCAATGGATGCTGATGAAGTTATGGCTACTGTTCTCGGAAAAAGACCATCGTA
TGTTAAAGGGATGGGATATGGTCCACAGCCATCACGGAGTCAGAAGACAAATTATTCACAGGAGTATGTCCAATCATTAGAGACTCACCTTGTAAGGACTGAAGAATGTT
TGGAGAATCAAGTACGAGAAATGAAGGAATCAGAGTCTCGAGTGAAGGAACAAATGAAGGAACAAATGGAAGAACTATTGGCCATGCAGCGTCAAGAGTATGAAAGAAGA
TTTAGCCAAATGAATGAAATCTTAGAAAGATTCATTAGAGCAAATCCATCAGTTAGAAAGCCCCCCTCGTGCCGAACGTCGTTTCCATCGCCCCACCGATTCCGACCACC
GCTTGCTCTGACTCCGATCGTCTCCCCTCCGCCTCCAGCCGTCACCGTCCTTCTTCGGCCATCTCCCTCCACATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACTGGAAGAGATCGCGGACGTAAATTCCGGTAAAGTTCGTCTTGATTCTTGGATATCTTGCCGCATTGACGGCATTAGTAGGGCTCGTGTGCAGTCCAGTATTAG
GATCGAACTAGTTTCAGTTAATGGTCGAGTTATTGATAAGGATACCCCCACTCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATTGAATACAAAGTGGG
TCGTATCTCATAGTGTCACCAGGATAAGGACAAGTCAGAAAAAAAATAAACTTAGTCGTAGCAAGCTACCTTTCAACCATTGTGCTAGAACGAAATCTTTTCTTTCTCAT
AGAGAAGATAATGAAAAAATGGTAGCATTGACCCAAGAGCAAGCCAGCTCGAGTACACCAATGGATGCTGATGAAGTTATGGCTACTGTTCTCGGAAAAAGACCATCGTA
TGTTAAAGGGATGGGATATGGTCCACAGCCATCACGGAGTCAGAAGACAAATTATTCACAGGAGTATGTCCAATCATTAGAGACTCACCTTGTAAGGACTGAAGAATGTT
TGGAGAATCAAGTACGAGAAATGAAGGAATCAGAGTCTCGAGTGAAGGAACAAATGAAGGAACAAATGGAAGAACTATTGGCCATGCAGCGTCAAGAGTATGAAAGAAGA
TTTAGCCAAATGAATGAAATCTTAGAAAGATTCATTAGAGCAAATCCATCAGTTAGAAAGCCCCCCTCGTGCCGAACGTCGTTTCCATCGCCCCACCGATTCCGACCACC
GCTTGCTCTGACTCCGATCGTCTCCCCTCCGCCTCCAGCCGTCACCGTCCTTCTTCGGCCATCTCCCTCCACATAA
Protein sequenceShow/hide protein sequence
MRLEEIADVNSGKVRLDSWISCRIDGISRARVQSSIRIELVSVNGRVIDKDTPTRMSPTWMLWIIASVLNTKWVVSHSVTRIRTSQKKNKLSRSKLPFNHCARTKSFLSH
REDNEKMVALTQEQASSSTPMDADEVMATVLGKRPSYVKGMGYGPQPSRSQKTNYSQEYVQSLETHLVRTEECLENQVREMKESESRVKEQMKEQMEELLAMQRQEYERR
FSQMNEILERFIRANPSVRKPPSCRTSFPSPHRFRPPLALTPIVSPPPPAVTVLLRPSPST