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Spg006434 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006434
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:49441267..49442422
RNA-Seq ExpressionSpg006434
SyntenySpg006434
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]1.8e-1078.57Show/hide
Query:  VHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS
        V+TGY+ LLTL+VLRDNDA+VSAGRVPL+QR+WE WA PTTS
Subjt:  VHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-0960Show/hide
Query:  PRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS
        PRGNR SLQ  E+ KT             PL TLSVL DNDAVVSAG+ PL+QRRWE   GPTTS
Subjt:  PRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS

KAA0037923.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-1060.32Show/hide
Query:  RGISGQICWESRLHFFRPRGNRPSLQARELAK---TPEARWYRVHTGYIPLLTLSVLRDNDAV
        RGIS    WE  LH FR R  +PS Q ++LA+    PEA WYRVH G+IPLLTLSVLR+ND V
Subjt:  RGISGQICWESRLHFFRPRGNRPSLQARELAK---TPEARWYRVHTGYIPLLTLSVLRDNDAV

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]3.5e-0960.61Show/hide
Query:  RPRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS
        + RGNRPSLQ  EL KT              L TLSVLR+NDA VSAGRVPL+QRRWE   GPTTS
Subjt:  RPRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-0960Show/hide
Query:  PRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS
        PRGNR SLQ  E+ KT             PL TLSVL DNDAVVSAG+ PL+QRRWE   GPTTS
Subjt:  PRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein8.9e-1178.57Show/hide
Query:  VHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS
        V+TGY+ LLTL+VLRDNDA+VSAGRVPL+QR+WE WA PTTS
Subjt:  VHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS

A0A5A7T4K8 Reverse transcriptase1.2e-1060.32Show/hide
Query:  RGISGQICWESRLHFFRPRGNRPSLQARELAK---TPEARWYRVHTGYIPLLTLSVLRDNDAV
        RGIS    WE  LH FR R  +PS Q ++LA+    PEA WYRVH G+IPLLTLSVLR+ND V
Subjt:  RGISGQICWESRLHFFRPRGNRPSLQARELAK---TPEARWYRVHTGYIPLLTLSVLRDNDAV

A0A5A7T7M6 Reverse transcriptase2.2e-0960Show/hide
Query:  PRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS
        PRGNR SLQ  E+ KT             PL TLSVL DNDAVVSAG+ PL+QRRWE   GPTTS
Subjt:  PRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS

A0A5A7TDY3 Uncharacterized protein1.7e-0960.61Show/hide
Query:  RPRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS
        + RGNRPSLQ  EL KT              L TLSVLR+NDA VSAGRVPL+QRRWE   GPTTS
Subjt:  RPRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS

A0A5D3BTP3 Reverse transcriptase2.2e-0960Show/hide
Query:  PRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS
        PRGNR SLQ  E+ KT             PL TLSVL DNDAVVSAG+ PL+QRRWE   GPTTS
Subjt:  PRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATCTGTACTTGTTGTGTTCGGGGTATTTCTGGACAAATCTGTTGGGAATCTCG
TTTGCATTTCTTCAGGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAGGGAACTAGCCAAGACTCCCGAGGCTAGATGGTACCGAGTGCACACAGGTTATATTCCGTTGT
TGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGTCCCACTACAACAAAGACGATGGGAGTTCTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATCTGTACTTGTTGTGTTCGGGGTATTTCTGGACAAATCTGTTGGGAATCTCG
TTTGCATTTCTTCAGGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAGGGAACTAGCCAAGACTCCCGAGGCTAGATGGTACCGAGTGCACACAGGTTATATTCCGTTGT
TGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGTCCCACTACAACAAAGACGATGGGAGTTCTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MTRSRFNFRRKIEGSREARICTCCVRGISGQICWESRLHFFRPRGNRPSLQARELAKTPEARWYRVHTGYIPLLTLSVLRDNDAVVSAGRVPLQQRRWEFWAGPTTS