; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006439 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006439
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:47401967..47404629
RNA-Seq ExpressionSpg006439
SyntenySpg006439
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7100170.1 hypothetical protein CFC21_101709 [Triticum aestivum]2.4e-0433.98Show/hide
Query:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV
        S  AE + V  G+ LA+     ++ V SDS+ +++ L Q    +V  ++++ D   M   F H+ + H  RE N +AHELA+   +S+P VW  N  D V
Subjt:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV

Query:  VRL
        + L
Subjt:  VRL

VAH98500.1 unnamed protein product [Triticum turgidum subsp. durum]2.4e-0433.98Show/hide
Query:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV
        S  AE + V  G+ LA+     ++ + SDS+ +++ L Q    +V  ++++ D   M   F H+ + H  RE N +AHELAR   +S+P VW  N  D V
Subjt:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV

Query:  VRL
        + L
Subjt:  VRL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.9e-0535.19Show/hide
Query:  SSLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLY--STPHVWYSNFL
        S L AE+  +LEG+K A+ ++   L V SDSL  I ++        D  N V +I  +   F  I+F H  R+ N  AH LA+ G+   S  + W  NF 
Subjt:  SSLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLY--STPHVWYSNFL

Query:  DWVVRLAQ
         W++ L Q
Subjt:  DWVVRLAQ

XP_042962749.1 uncharacterized protein LOC122297028 [Carya illinoinensis]8.4e-0535.79Show/hide
Query:  MLALQKGSSTFTSSLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELAR
        ++   K      +S   E   VL G++   Q  + +L + SD L LI++L  +  C  D A V+ +I R+R+ FH I+F HV R+ N +AH LAR
Subjt:  MLALQKGSSTFTSSLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELAR

XP_042969199.1 uncharacterized protein LOC122301911 [Carya illinoinensis]3.2e-0436.26Show/hide
Query:  EVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSN
        E + +L G++L  Q  V +L + +D L L++ L +   C  D A ++ DI R+ A F  +   HV R  NL+AH LAR       HVW  N
Subjt:  EVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSN

TrEMBL top hitse value%identityAlignment
A0A2N9J6Y2 Uncharacterized protein1.2e-0434.02Show/hide
Query:  AEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV
        AE +     ++LA    ++ + V  DSL +I+ L   ERC     +++WDI  +   F  +N+ HV+RE N  AH LAR  L  +     S+FL W+
Subjt:  AEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV

A0A3B6PUV6 RNase H domain-containing protein1.5e-0434.95Show/hide
Query:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV
        S  AE + V  G+ LA+     +  V SDS+ +++ L Q    +V  ++++ D   M   F H+ + H  RE N +AHELAR   +S+P VW  N  D V
Subjt:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV

Query:  VRL
        + L
Subjt:  VRL

A0A3B6S9W2 RNase H domain-containing protein1.2e-0433.98Show/hide
Query:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV
        S  AE + V  G+ LA+     ++ V SDS+ +++ L Q    +V  ++++ D   M   F H+ + H  RE N +AHELA+   +S+P VW  N  D V
Subjt:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV

Query:  VRL
        + L
Subjt:  VRL

A0A446RIG8 RNase H domain-containing protein1.2e-0433.98Show/hide
Query:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV
        S  AE + V  G+ LA+     ++ + SDS+ +++ L Q    +V  ++++ D   M   F H+ + H  RE N +AHELAR   +S+P VW  N  D V
Subjt:  SLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFLDWV

Query:  VRL
        + L
Subjt:  VRL

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-0535.19Show/hide
Query:  SSLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLY--STPHVWYSNFL
        S L AE+  +LEG+K A+ ++   L V SDSL  I ++        D  N V +I  +   F  I+F H  R+ N  AH LA+ G+   S  + W  NF 
Subjt:  SSLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLY--STPHVWYSNFL

Query:  DWVVRLAQ
         W++ L Q
Subjt:  DWVVRLAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGCTTTGCAAAAAGGATCGTCTACATTTACTAGCTCGTTGTGTGCTGAGGTTGTGGTGGTTCTAGAGGGGATCAAGTTAGCAAGCCAGAATGATGTCCAAAGATT
GACAGTTTTGTCAGATTCCCTTGCATTGATATCAATTCTGATGCAGACGGAGCGGTGTGCGGTGGATTGTGCCAATGTTGTTTGGGATATTAATAGAATGAGAGCTTTGT
TCCATCACATTAATTTTTTCCATGTTAAGCGTGAATTTAATTTATTGGCTCATGAATTGGCCCGTGCGGGTTTGTATTCGACACCACATGTGTGGTATTCCAATTTCCTA
GATTGGGTTGTAAGGCTAGCTCAATGGCCATACTCGGGTTCAGTGGAGCAATCTGGGCATGAAGCATGTCCGAATGCCATCTGGCGCACAATCCTGTGCCTAGCTCGACA
CCGTCTTGATGGAATGCACGATCCTGTTCTAGAGAAGCCCACATCCCAAACCCTAGCTTCTTCTACCTTCAGCCGCCGCAGCTCCCTTCTTCAACCTTCAGCGCACAACT
TTCATCCTCGGTTCTTCATCATTCTCTCGCCGGCCGCCGCAGCTGTTGCTCTCCCCTTCGGCCGTGGTCTGTTCTTCAACATTCGGCCGCCGGTGAAGATTTTGCAAACA
ACCTTCGGTCGCCGCTGCTTTTGCAAACAAGCTTTTATCCTCGCGTGCAACGCACGACCGAATTGGACGGCGCCGGAGAACAAGATTTTGCAAAGAACTTCGGCTGCCGC
AACTGTTTCTCGTGTGCATTTCGACCGAAGGCGAATGGACAGCGTGGGTTTCACCTCGTCGACTTCTTTCTCGCATTCTAACAGGTTAGTCAATCTTCCATATCCAGCGG
TTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGCTTTGCAAAAAGGATCGTCTACATTTACTAGCTCGTTGTGTGCTGAGGTTGTGGTGGTTCTAGAGGGGATCAAGTTAGCAAGCCAGAATGATGTCCAAAGATT
GACAGTTTTGTCAGATTCCCTTGCATTGATATCAATTCTGATGCAGACGGAGCGGTGTGCGGTGGATTGTGCCAATGTTGTTTGGGATATTAATAGAATGAGAGCTTTGT
TCCATCACATTAATTTTTTCCATGTTAAGCGTGAATTTAATTTATTGGCTCATGAATTGGCCCGTGCGGGTTTGTATTCGACACCACATGTGTGGTATTCCAATTTCCTA
GATTGGGTTGTAAGGCTAGCTCAATGGCCATACTCGGGTTCAGTGGAGCAATCTGGGCATGAAGCATGTCCGAATGCCATCTGGCGCACAATCCTGTGCCTAGCTCGACA
CCGTCTTGATGGAATGCACGATCCTGTTCTAGAGAAGCCCACATCCCAAACCCTAGCTTCTTCTACCTTCAGCCGCCGCAGCTCCCTTCTTCAACCTTCAGCGCACAACT
TTCATCCTCGGTTCTTCATCATTCTCTCGCCGGCCGCCGCAGCTGTTGCTCTCCCCTTCGGCCGTGGTCTGTTCTTCAACATTCGGCCGCCGGTGAAGATTTTGCAAACA
ACCTTCGGTCGCCGCTGCTTTTGCAAACAAGCTTTTATCCTCGCGTGCAACGCACGACCGAATTGGACGGCGCCGGAGAACAAGATTTTGCAAAGAACTTCGGCTGCCGC
AACTGTTTCTCGTGTGCATTTCGACCGAAGGCGAATGGACAGCGTGGGTTTCACCTCGTCGACTTCTTTCTCGCATTCTAACAGGTTAGTCAATCTTCCATATCCAGCGG
TTTCATAG
Protein sequenceShow/hide protein sequence
MLALQKGSSTFTSSLCAEVVVVLEGIKLASQNDVQRLTVLSDSLALISILMQTERCAVDCANVVWDINRMRALFHHINFFHVKREFNLLAHELARAGLYSTPHVWYSNFL
DWVVRLAQWPYSGSVEQSGHEACPNAIWRTILCLARHRLDGMHDPVLEKPTSQTLASSTFSRRSSLLQPSAHNFHPRFFIILSPAAAAVALPFGRGLFFNIRPPVKILQT
TFGRRCFCKQAFILACNARPNWTAPENKILQRTSAAATVSRVHFDRRRMDSVGFTSSTSFSHSNRLVNLPYPAVS