; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006441 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006441
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold2:48280008..48281693
RNA-Seq ExpressionSpg006441
SyntenySpg006441
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051198.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-2134.57Show/hide
Query:  QLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVFAREN
        Q+EERVE TEK+I  LKE +  ++K +ER+   M +  + K K  S      S M K + +++E     +  G       TV D+SK+K+LEM +F  EN
Subjt:  QLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVFAREN

Query:  PD----------------------------ARLFRAKRPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRR
        P+                            +R+F   R S + SL  R + I+Q+G+  +Y KKF TYSA LP M ++V+ + F+  L+P L+A V+SR 
Subjt:  PD----------------------------ARLFRAKRPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRR

Query:  PVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSRK
        P  L+E M EAQL+ DR+LA++      G+    EG  +  +K
Subjt:  PVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSRK

KAA0054754.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]9.0e-2234.27Show/hide
Query:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF
        M Q+Q+EERVE TEK+I  LKE +  +++ MER+   M D  + K K  S   +GS    K ++E         +    +     + D+SK+K+LE+ +F
Subjt:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF

Query:  ARENPDARLFRAKRPSQEG-------------SLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMTEA
          ENP++ ++RA+   Q               SL  R + I+Q+G+  +Y KKF  YSA LP M ++V+ + FL  L+  L+A VVSR P  L++ M EA
Subjt:  ARENPDARLFRAKRPSQEG-------------SLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMTEA

Query:  QLIEDRDLAIQKAYESCGLRPNSEGKHACSRKDRTERKEYQPLCSSNE
        QL+ DR+LA++ A    G+ P  +G    + K  T+ +  + +   NE
Subjt:  QLIEDRDLAIQKAYESCGLRPNSEGKHACSRKDRTERKEYQPLCSSNE

TYK03703.1 retrotransposon protein [Cucumis melo var. makuwa]6.9e-2234.82Show/hide
Query:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF
        M Q+Q+EERVE TEK+I  LKE +  ++K +ER+   M +  + K K  S      S M K + +++E     +  G       TV D+SK+K+LEM +F
Subjt:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF

Query:  ARENPD----------------------------ARLFRAKRPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAV
          ENP+                            +R+F   R S + SL  R + I+Q+G+  +Y KKF TYSA LP M ++V+ + F+  L+P L+A V
Subjt:  ARENPD----------------------------ARLFRAKRPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAV

Query:  VSRRPVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSRK
        +SR P  L+E M EAQL+ DR+LA++      G+    EG  +  +K
Subjt:  VSRRPVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSRK

TYK05440.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-2136.61Show/hide
Query:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVG-DKSKFKRLEMLV
        M Q+Q+EER+E TEK++  LKE +  ++K M+R+   + D  + K K  S   +GS    K ++E          E D  G   T+  D+SK+K+LEM +
Subjt:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVG-DKSKFKRLEMLV

Query:  FARENPDARLFR------------AKR-----PSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDE
        F  ENP++ ++R             KR      + + SL  R + I+QEG+  DY KKF  YSA LP M ++V+ + FL  L+P L+A V+SR P  L++
Subjt:  FARENPDARLFR------------AKR-----PSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDE

Query:  IMTEAQLIEDRDLAIQKAYESCGL
         M  AQL+ DR+LA++ A    G+
Subjt:  IMTEAQLIEDRDLAIQKAYESCGL

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]1.5e-2131.11Show/hide
Query:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF
        M Q+Q+E+RV+ TEK+I  LKE +  ++K MERM   + +  + K +  S   +GS    K + E  +   +G+          T+GD+SK+K+LEM +F
Subjt:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF

Query:  ARENPDARLFRAK----------------------------------------------------RPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALL
          ENP++ ++RA+                                                    + + + SL  R + I+Q+G+  DY KKF  YSA L
Subjt:  ARENPDARLFRAK----------------------------------------------------RPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALL

Query:  PEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSR
        P M ++V+ + FL  L+P L+A VVSR P+ L+E M EAQL+ DR+LA+Q +    G R   +G+ + ++
Subjt:  PEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSR

TrEMBL top hitse value%identityAlignment
A0A5A7SW87 Gypsy/ty3 element polyprotein4.8e-2135.87Show/hide
Query:  MTQKQLEERVETTEKDISVLKETVQRI---EKGMERMMMMMADVV--ANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGA--PKTVGDKSKFK
        MTQK +EER++ +EK+I  +K+ VQRI   EK ME+M  M+ ++     +   SSE+   S+   K R    E+   GD+EG+   +  P    D+ KFK
Subjt:  MTQKQLEERVETTEKDISVLKETVQRI---EKGMERMMMMMADVV--ANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGA--PKTVGDKSKFK

Query:  RLEMLVFARENPDARLFRAK-----------------------RPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKA
        +LEM VF  E+PD  ++RA+                       +  + G+ C RFL IKQEG++ +Y ++FE  SA LPEM + V+   F+N L P ++ 
Subjt:  RLEMLVFARENPDARLFRAK-----------------------RPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKA

Query:  AVVSRRPVGLDEIMTEAQLIEDR
         V + R VGL+++M  A+L E++
Subjt:  AVVSRRPVGLDEIMTEAQLIEDR

A0A5A7U7D1 Retrotransposon protein4.8e-2134.57Show/hide
Query:  QLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVFAREN
        Q+EERVE TEK+I  LKE +  ++K +ER+   M +  + K K  S      S M K + +++E     +  G       TV D+SK+K+LEM +F  EN
Subjt:  QLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVFAREN

Query:  PD----------------------------ARLFRAKRPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRR
        P+                            +R+F   R S + SL  R + I+Q+G+  +Y KKF TYSA LP M ++V+ + F+  L+P L+A V+SR 
Subjt:  PD----------------------------ARLFRAKRPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRR

Query:  PVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSRK
        P  L+E M EAQL+ DR+LA++      G+    EG  +  +K
Subjt:  PVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSRK

A0A5A7UHY0 Transposon Ty3-G Gag-Pol polyprotein4.3e-2234.27Show/hide
Query:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF
        M Q+Q+EERVE TEK+I  LKE +  +++ MER+   M D  + K K  S   +GS    K ++E         +    +     + D+SK+K+LE+ +F
Subjt:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF

Query:  ARENPDARLFRAKRPSQEG-------------SLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMTEA
          ENP++ ++RA+   Q               SL  R + I+Q+G+  +Y KKF  YSA LP M ++V+ + FL  L+  L+A VVSR P  L++ M EA
Subjt:  ARENPDARLFRAKRPSQEG-------------SLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMTEA

Query:  QLIEDRDLAIQKAYESCGLRPNSEGKHACSRKDRTERKEYQPLCSSNE
        QL+ DR+LA++ A    G+ P  +G    + K  T+ +  + +   NE
Subjt:  QLIEDRDLAIQKAYESCGLRPNSEGKHACSRKDRTERKEYQPLCSSNE

A0A5D3BVG6 Retrotransposon protein3.3e-2234.82Show/hide
Query:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF
        M Q+Q+EERVE TEK+I  LKE +  ++K +ER+   M +  + K K  S      S M K + +++E     +  G       TV D+SK+K+LEM +F
Subjt:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVF

Query:  ARENPD----------------------------ARLFRAKRPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAV
          ENP+                            +R+F   R S + SL  R + I+Q+G+  +Y KKF TYSA LP M ++V+ + F+  L+P L+A V
Subjt:  ARENPD----------------------------ARLFRAKRPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAV

Query:  VSRRPVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSRK
        +SR P  L+E M EAQL+ DR+LA++      G+    EG  +  +K
Subjt:  VSRRPVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSRK

A0A5D3C259 Retrotransposon protein7.4e-2236.61Show/hide
Query:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVG-DKSKFKRLEMLV
        M Q+Q+EER+E TEK++  LKE +  ++K M+R+   + D  + K K  S   +GS    K ++E          E D  G   T+  D+SK+K+LEM +
Subjt:  MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVG-DKSKFKRLEMLV

Query:  FARENPDARLFR------------AKR-----PSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDE
        F  ENP++ ++R             KR      + + SL  R + I+QEG+  DY KKF  YSA LP M ++V+ + FL  L+P L+A V+SR P  L++
Subjt:  FARENPDARLFR------------AKR-----PSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDE

Query:  IMTEAQLIEDRDLAIQKAYESCGL
         M  AQL+ DR+LA++ A    G+
Subjt:  IMTEAQLIEDRDLAIQKAYESCGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29750.1 Eukaryotic aspartyl protease family protein2.4e-0434.33Show/hide
Query:  FLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMT-EAQLI
        + GI+QEG++ DYR++FE        +P    E  FL  L+P L+ AV   +P G++   + +A+L+
Subjt:  FLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMT-EAQLI

AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding2.1e-0535.29Show/hide
Query:  FLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMTEAQLIED
        + GI+QEG++ +YR++FE        +P   +E  FL  L+P L+ AV   +P G+ ++M  AQ +E+
Subjt:  FLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMTEAQLIED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACAGAAACAACTCGAAGAGCGGGTAGAAACGACTGAGAAGGATATATCCGTGCTAAAAGAGACGGTCCAGAGGATCGAAAAGGGAATGGAAAGAATGATGATGAT
GATGGCTGATGTGGTGGCCAACAAAGGGAAGGCATCGTCTGAAGTAGTCGAAGGGTCTTCTCAAATGACAAAAACAAGGGTAGAAGTGGAGGAAGAAGGTGAGAAGGGAG
ACGACGAAGGCGACTGGATCGGTGCGCCGAAAACAGTGGGTGATAAAAGCAAGTTCAAAAGGTTGGAGATGCTCGTGTTCGCTCGAGAAAATCCCGATGCGCGGTTGTTT
AGGGCTAAAAGACCATCCCAAGAAGGCAGCCTCTGCGTTCGGTTCCTCGGGATAAAACAAGAAGGTACAATCGTCGATTATAGAAAAAAGTTCGAAACCTATTCTGCTCT
GTTACCGGAGATGCCGAAGACGGTAATGGAAAACACGTTTTTGAATGAGCTAAAGCCAGAGCTCAAGGCTGCGGTTGTGAGTCGAAGACCAGTTGGGCTTGATGAAATAA
TGACTGAGGCCCAATTGATAGAGGATAGGGACCTGGCTATCCAGAAAGCCTATGAATCATGCGGATTAAGGCCCAATAGTGAGGGAAAACATGCATGTTCTAGAAAAGAC
AGAACAGAAAGAAAGGAGTACCAACCTCTTTGTAGCTCAAATGAGTTGATCTCCTTGTGGTGTTTTCCTTCTCCAACTTCTCTTGGACAACCTCTAGAGTCTTCCCTACT
ATTCTCCGGGCCAAGAACGACTTGTGGGAGTCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGACACAGAAACAACTCGAAGAGCGGGTAGAAACGACTGAGAAGGATATATCCGTGCTAAAAGAGACGGTCCAGAGGATCGAAAAGGGAATGGAAAGAATGATGATGAT
GATGGCTGATGTGGTGGCCAACAAAGGGAAGGCATCGTCTGAAGTAGTCGAAGGGTCTTCTCAAATGACAAAAACAAGGGTAGAAGTGGAGGAAGAAGGTGAGAAGGGAG
ACGACGAAGGCGACTGGATCGGTGCGCCGAAAACAGTGGGTGATAAAAGCAAGTTCAAAAGGTTGGAGATGCTCGTGTTCGCTCGAGAAAATCCCGATGCGCGGTTGTTT
AGGGCTAAAAGACCATCCCAAGAAGGCAGCCTCTGCGTTCGGTTCCTCGGGATAAAACAAGAAGGTACAATCGTCGATTATAGAAAAAAGTTCGAAACCTATTCTGCTCT
GTTACCGGAGATGCCGAAGACGGTAATGGAAAACACGTTTTTGAATGAGCTAAAGCCAGAGCTCAAGGCTGCGGTTGTGAGTCGAAGACCAGTTGGGCTTGATGAAATAA
TGACTGAGGCCCAATTGATAGAGGATAGGGACCTGGCTATCCAGAAAGCCTATGAATCATGCGGATTAAGGCCCAATAGTGAGGGAAAACATGCATGTTCTAGAAAAGAC
AGAACAGAAAGAAAGGAGTACCAACCTCTTTGTAGCTCAAATGAGTTGATCTCCTTGTGGTGTTTTCCTTCTCCAACTTCTCTTGGACAACCTCTAGAGTCTTCCCTACT
ATTCTCCGGGCCAAGAACGACTTGTGGGAGTCTATAG
Protein sequenceShow/hide protein sequence
MTQKQLEERVETTEKDISVLKETVQRIEKGMERMMMMMADVVANKGKASSEVVEGSSQMTKTRVEVEEEGEKGDDEGDWIGAPKTVGDKSKFKRLEMLVFARENPDARLF
RAKRPSQEGSLCVRFLGIKQEGTIVDYRKKFETYSALLPEMPKTVMENTFLNELKPELKAAVVSRRPVGLDEIMTEAQLIEDRDLAIQKAYESCGLRPNSEGKHACSRKD
RTERKEYQPLCSSNELISLWCFPSPTSLGQPLESSLLFSGPRTTCGSL