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Spg006483 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006483
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:47977357..47978267
RNA-Seq ExpressionSpg006483
SyntenySpg006483
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-0755.88Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGV
        VEIELP+PDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GGGV
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.9e-0865.52Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGV
        VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GGGV
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGV

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-0958.33Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVGSVP
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GGGV   P
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVGSVP

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]9.0e-1856.07Show/hide
Query:  GVLGGPHYIVGLVNVGCTGRALHKV----EIELPVPDTLPTSAESSRSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLA
        GV GGPHYIVGLVNVGCTGR LH +    EIEL VPDTLPTSAESS S+SS             S  +   R+  E        E+DV WLHA+FR K+A
Subjt:  GVLGGPHYIVGLVNVGCTGRALHKV----EIELPVPDTLPTSAESSRSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLA

Query:  GGLGGGV
        GG GGGV
Subjt:  GGLGGGV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-0958.33Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVGSVP
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GGGV   P
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVGSVP

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase9.1e-0855.88Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGV
        VEIELP+PDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GGGV
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGV

A0A5A7VMG9 Reverse transcriptase4.8e-0958.33Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVGSVP
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GGGV   P
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVGSVP

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.4e-0865.52Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGV
        VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GGGV
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGV

A0A5D3CAC6 Uncharacterized protein4.3e-1856.07Show/hide
Query:  GVLGGPHYIVGLVNVGCTGRALHKV----EIELPVPDTLPTSAESSRSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLA
        GV GGPHYIVGLVNVGCTGR LH +    EIEL VPDTLPTSAESS S+SS             S  +   R+  E        E+DV WLHA+FR K+A
Subjt:  GVLGGPHYIVGLVNVGCTGRALHKV----EIELPVPDTLPTSAESSRSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLA

Query:  GGLGGGV
        GG GGGV
Subjt:  GGLGGGV

A0A5D3DX39 Reverse transcriptase4.8e-0958.33Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVGSVP
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GGGV   P
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVGSVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCC
AACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTA
AGCTAGCAGGTGGTCTGGGAGGGGGCGTTGGGTCAGTTCCGATAGAACTAGCAGAGTACAGTCCAAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCC
AACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTA
AGCTAGCAGGTGGTCTGGGAGGGGGCGTTGGGTCAGTTCCGATAGAACTAGCAGAGTACAGTCCAAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVGLVNVGCTGRALHKVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVGSVPIELAEYSPSIVESESSQD