; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006490 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006490
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:48703735..48708033
RNA-Seq ExpressionSpg006490
SyntenySpg006490
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051327.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-2452.9Show/hide
Query:  LNKIFSKTFHENE-KENFATSYC------------IDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTS
        L + F ++F E+  KE    + C            +  EEVNNS + +QRTSV D IKPS TRSS+FQR+SMA  +EEN+CP STST+ SAF+RL++STS
Subjt:  LNKIFSKTFHENE-KENFATSYC------------IDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTS

Query:  KKSRPSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSGD
        KK RPSTS+FDHLK+T+DQ QR+M  L+ K+F E + D
Subjt:  KKSRPSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSGD

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-2359.48Show/hide
Query:  EKENFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMD
        E +N   SY    EE++NS + +QRTSV D IKP  TRSS+FQR+SMA  KEENKCP ST T+ SAF+RLS+STSKK RPST VFD LK+T+DQ QR+M 
Subjt:  EKENFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMD

Query:  NLEVKLFDEVSGDKKL
         L+ K F E + D K+
Subjt:  NLEVKLFDEVSGDKKL

KAA0066166.1 Retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-2360.18Show/hide
Query:  NFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMDNLE
        N+A+S     EEV+NS + +QRT V D IKPSITRSSIFQR SMA  +E+N+CP+STSTQ SAF+RLS+STSK+ RP TS FD LK+T+DQ QR+M  L+
Subjt:  NFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMDNLE

Query:  VKLFDEVSGDKKL
         K F E + D K+
Subjt:  VKLFDEVSGDKKL

KAA0066532.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-2357.76Show/hide
Query:  EKENFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMD
        E +N   SY    EEV+NS + +QRTS+ DHIKP  TRSS+FQR+SMA  +EEN+CP ST  + SAF+RLS+STSKK RPSTS FD LK+T+DQ QR+M 
Subjt:  EKENFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMD

Query:  NLEVKLFDEVSGDKKL
        +L+ K F E + D K+
Subjt:  NLEVKLFDEVSGDKKL

TYK15207.1 Retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-2360.18Show/hide
Query:  NFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMDNLE
        N+A+S     EEV+NS + +QRT V D IKPSITRSSIFQR SMA  +E+N+CP+STSTQ SAF+RLS+STSK+ RP TS FD LK+T+DQ QR+M  L+
Subjt:  NFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMDNLE

Query:  VKLFDEVSGDKKL
         K F E + D K+
Subjt:  VKLFDEVSGDKKL

TrEMBL top hitse value%identityAlignment
A0A5A7UA77 Retrotransposon gag protein1.3e-2452.9Show/hide
Query:  LNKIFSKTFHENE-KENFATSYC------------IDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTS
        L + F ++F E+  KE    + C            +  EEVNNS + +QRTSV D IKPS TRSS+FQR+SMA  +EEN+CP STST+ SAF+RL++STS
Subjt:  LNKIFSKTFHENE-KENFATSYC------------IDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTS

Query:  KKSRPSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSGD
        KK RPSTS+FDHLK+T+DQ QR+M  L+ K+F E + D
Subjt:  KKSRPSTSVFDHLKVTDDQPQRKMDNLEVKLFDEVSGD

A0A5A7UM99 Ty3-gypsy retrotransposon protein1.4e-2359.48Show/hide
Query:  EKENFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMD
        E +N   SY    EE++NS + +QRTSV D IKP  TRSS+FQR+SMA  KEENKCP ST T+ SAF+RLS+STSKK RPST VFD LK+T+DQ QR+M 
Subjt:  EKENFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMD

Query:  NLEVKLFDEVSGDKKL
         L+ K F E + D K+
Subjt:  NLEVKLFDEVSGDKKL

A0A5A7VII4 Retrotransposon gag protein1.9e-2360.18Show/hide
Query:  NFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMDNLE
        N+A+S     EEV+NS + +QRT V D IKPSITRSSIFQR SMA  +E+N+CP+STSTQ SAF+RLS+STSK+ RP TS FD LK+T+DQ QR+M  L+
Subjt:  NFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMDNLE

Query:  VKLFDEVSGDKKL
         K F E + D K+
Subjt:  VKLFDEVSGDKKL

A0A5D3CTF5 Retrotransposon gag protein1.9e-2360.18Show/hide
Query:  NFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMDNLE
        N+A+S     EEV+NS + +QRT V D IKPSITRSSIFQR SMA  +E+N+CP+STSTQ SAF+RLS+STSK+ RP TS FD LK+T+DQ QR+M  L+
Subjt:  NFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMDNLE

Query:  VKLFDEVSGDKKL
         K F E + D K+
Subjt:  VKLFDEVSGDKKL

A0A5D3DQU7 Retrotransposon gag protein1.9e-2357.76Show/hide
Query:  EKENFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMD
        E +N   SY    EEV+NS + +QRTS+ DHIKP  TRSS+FQR+SMA  +EEN+CP ST  + SAF+RLS+STSKK RPSTS FD LK+T+DQ QR+M 
Subjt:  EKENFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQRKMD

Query:  NLEVKLFDEVSGDKKL
        +L+ K F E + D K+
Subjt:  NLEVKLFDEVSGDKKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAACAAAATCTTCTCCAAAACTTTCCACGAAAATGAAAAAGAAAACTTTGCAACTTCCTATTGCATCGACGTAGAAGAAGTTAACAATTCTGAGAAGGATGAACA
AAGGACTTCCGTCTTGGATCACATCAAGCCTTCAATTACTCGTTCTTCAATATTCCAAAGAATGAGTATGGCCGCAACAAAAGAAGAAAATAAATGTCCGGTGTCCACCT
CCACTCAACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGCCGACCTTCAACATCTGTCTTTGATCACCTCAAAGTAACAGACGATCAACCTCAAAGA
AAAATGGATAACTTAGAGGTGAAACTGTTTGATGAAGTAAGCGGTGACAAGAAGCTTCAAAAAATTAATGCTGAGCGACTTGATGGAGCAAAATCCATGATCCAGCAAAG
TTGTGAGCAAAACTGGCCCCATTATGTGCACTTGCATAGTATTCTAGAGTCAATTTGCATCATATTTTTAACCACTCTGGAAATGCAACAATCCTCTAAGTTTTTACGAA
CTATTGCCAAAGACTTGGCATCTTCATCAGTCATGACAGAGGCACGCTCAATATCGGTGATTTCTTCACGGACTTTGAAAAATAGAGTTGAAGCTAGAATTCCCCAGAAA
TGCGACCGCATTTCTGGGAAGGCAAAATGGAAATGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTCACACGCGGGTCGTTCTTGACGAGTCTTCTTCGCACCT
AACCGGTTGTTTTGACCCCGAAACTGACTGCGCAACCTTCCAGCACATATTTCGGAGCTCCTCAACCACTTTCTACACTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAACAAAATCTTCTCCAAAACTTTCCACGAAAATGAAAAAGAAAACTTTGCAACTTCCTATTGCATCGACGTAGAAGAAGTTAACAATTCTGAGAAGGATGAACA
AAGGACTTCCGTCTTGGATCACATCAAGCCTTCAATTACTCGTTCTTCAATATTCCAAAGAATGAGTATGGCCGCAACAAAAGAAGAAAATAAATGTCCGGTGTCCACCT
CCACTCAACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGCCGACCTTCAACATCTGTCTTTGATCACCTCAAAGTAACAGACGATCAACCTCAAAGA
AAAATGGATAACTTAGAGGTGAAACTGTTTGATGAAGTAAGCGGTGACAAGAAGCTTCAAAAAATTAATGCTGAGCGACTTGATGGAGCAAAATCCATGATCCAGCAAAG
TTGTGAGCAAAACTGGCCCCATTATGTGCACTTGCATAGTATTCTAGAGTCAATTTGCATCATATTTTTAACCACTCTGGAAATGCAACAATCCTCTAAGTTTTTACGAA
CTATTGCCAAAGACTTGGCATCTTCATCAGTCATGACAGAGGCACGCTCAATATCGGTGATTTCTTCACGGACTTTGAAAAATAGAGTTGAAGCTAGAATTCCCCAGAAA
TGCGACCGCATTTCTGGGAAGGCAAAATGGAAATGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTCACACGCGGGTCGTTCTTGACGAGTCTTCTTCGCACCT
AACCGGTTGTTTTGACCCCGAAACTGACTGCGCAACCTTCCAGCACATATTTCGGAGCTCCTCAACCACTTTCTACACTATATAA
Protein sequenceShow/hide protein sequence
MLNKIFSKTFHENEKENFATSYCIDVEEVNNSEKDEQRTSVLDHIKPSITRSSIFQRMSMAATKEENKCPVSTSTQPSAFQRLSVSTSKKSRPSTSVFDHLKVTDDQPQR
KMDNLEVKLFDEVSGDKKLQKINAERLDGAKSMIQQSCEQNWPHYVHLHSILESICIIFLTTLEMQQSSKFLRTIAKDLASSSVMTEARSISVISSRTLKNRVEARIPQK
CDRISGKAKWKCDRISGKTEAVPSHTRVVLDESSSHLTGCFDPETDCATFQHIFRSSSTTFYTI