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Spg006494 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006494
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:47909772..47910643
RNA-Seq ExpressionSpg006494
SyntenySpg006494
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]5.6e-2973Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWL LY ES            VMSGL+ VFNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]9.3e-2463.21Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL LY+E V   ++ +        GIVR DDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
        AGGPGG
Subjt:  AGGPGG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]7.1e-2464.15Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS     +   VMSGL+ VFN+SV STGIVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
         GGP G
Subjt:  AGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.0e-2274.7Show/hide
Query:  IELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        IELPVPDTLPTSAESS S+SSTWL LY ES            VMS L+ VFNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  IELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]9.3e-2463.21Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL LY+E V   ++ +        GIVR DDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
        AGGPGG
Subjt:  AGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein2.7e-2973Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWL LY ES            VMSGL+ VFNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG

A0A5A7VMG9 Reverse transcriptase4.5e-2463.21Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL LY+E V   ++ +        GIVR DDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
        AGGPGG
Subjt:  AGGPGG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein3.4e-2464.15Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS     +   VMSGL+ VFN+SV STGIVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
         GGP G
Subjt:  AGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein5.0e-2374.7Show/hide
Query:  IELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        IELPVPDTLPTSAESS S+SSTWL LY ES            VMS L+ VFNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  IELPVPDTLPTSAESSRSSSSTWLVLYIES------------VMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3DX39 Reverse transcriptase4.5e-2463.21Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL LY+E V   ++ +        GIVR DDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
        AGGPGG
Subjt:  AGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGTGTTGTATATTGAGTCCGTTATGTCAGGGCTGTACCATGTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGTGTTGTATATTGAGTCCGTTATGTCAGGGCTGTACCATGTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLVLYIESVMSGLYHVFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG