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Spg006504 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006504
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:49633294..49633963
RNA-Seq ExpressionSpg006504
SyntenySpg006504
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2711776.1 hypothetical protein I3760_04G092800 [Carya illinoinensis]3.0e-0428.95Show/hide
Query:  NLADSRLESLGNHERWSPPPPNCYKLNADASWNENLLIGGV-----------------------------ALAIKEGLKAYSSYGGSLKPPLMVESDALE
        +L D+    +    RW PPP +  KLN D +    L + GV                             A+A+  GL+    +G    P LM+E+D L 
Subjt:  NLADSRLESLGNHERWSPPPPNCYKLNADASWNENLLIGGV-----------------------------ALAIKEGLKAYSSYGGSLKPPLMVESDALE

Query:  IIRALNFECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAA
        ++ ALN     ++D A +L D+R L  +   +      R GN VAH LAR A
Subjt:  IIRALNFECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAA

TXG71533.1 hypothetical protein EZV62_000112 [Acer yangbiense]6.4e-0736.97Show/hide
Query:  RWSPPPPNCYKLNADASWNENLLIGGV--------ALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNFECGDISDSAIVLNDVRFLAPSAGVISFG
        RW  PP    K+N DA+ N  L + G         ALAI EGL+   S   S    + +ESDAL +++A+N +    S+  +VLND+  +      +SF 
Subjt:  RWSPPPPNCYKLNADASWNENLLIGGV--------ALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNFECGDISDSAIVLNDVRFLAPSAGVISFG

Query:  KSPRAGNCVAHCLARAAAN
          PR GN VAH LA+   N
Subjt:  KSPRAGNCVAHCLARAAAN

XP_015385738.1 uncharacterized protein LOC107177034 [Citrus sinensis]7.8e-0526.52Show/hide
Query:  AKRNLEEQRRRSIPNLADSRLESLGNHERWSPPPPNCYKLNADASWNENLLIGGVALAIKEG-----LKAYSS--YGGSLKPP-----------------
        A+  +E  RR   P L      S  N + WSPPP N +K+N DA+ N +    G+ + I++      + A  S  + G ++                   
Subjt:  AKRNLEEQRRRSIPNLADSRLESLGNHERWSPPPPNCYKLNADASWNENLLIGGVALAIKEG-----LKAYSS--YGGSLKPP-----------------

Query:  --LMVESDALEIIRALNFECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAAANLRPVHSLSSTVFWSPP
          +MVESD  E+++ +N   G  ++   V+++++ L+     IS+  +PR+ N  AH LA+ A         + TV W  P
Subjt:  --LMVESDALEIIRALNFECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAAANLRPVHSLSSTVFWSPP

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.8e-0729.53Show/hide
Query:  ESLGNHERWSPPPPNCYKLNADASWNENLLIGGV-----------------------------ALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNF
        ++L N  +W PPP + + LNADASW+++   GG+                             A AI EGL+  ++ G  +  PL +E+D+ E+   LN 
Subjt:  ESLGNHERWSPPPPNCYKLNADASWNENLLIGGV-----------------------------ALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNF

Query:  ECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAAANLR
        +  D++ +  V+ ++  L  S  +++F K  R  N  AH LA+ A+ LR
Subjt:  ECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAAANLR

XP_023915286.1 uncharacterized protein LOC112026812 [Quercus suber]1.7e-0429.66Show/hide
Query:  ESLGNHERWSPPPPNCYKLNADASWNENLLIGGVALAIKEG----LKAYSSYGGSLKP----------------------PLMVESDALEIIRALNFECG
        ESL + +RW PP  + YKLN D +   ++   GV + I+ G    + A S+ G ++                         L+VE D L +++A+     
Subjt:  ESLGNHERWSPPPPNCYKLNADASWNENLLIGGVALAIKEG----LKAYSSYGGSLKP----------------------PLMVESDALEIIRALNFECG

Query:  DISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAAANL
        D S    +++DVR LA    ++ F    R+ N VAH LAR A N+
Subjt:  DISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAAANL

TrEMBL top hitse value%identityAlignment
A0A5B6VU56 Reverse transcriptase5.5e-0430Show/hide
Query:  IPNLADSRLESLGNHE-RWSPPPPNCYKLNADASWNENL--LIGGVALAIKEGLKAYS-SYGGSLKP-----------------------PLMVESDALE
        I  L +   ++ GN E RW+PP  N  KLN DAS+N+N+   + GV     EGL   + +Y     P                        + VE D+L 
Subjt:  IPNLADSRLESLGNHE-RWSPPPPNCYKLNADASWNENL--LIGGVALAIKEGLKAYS-SYGGSLKP-----------------------PLMVESDALE

Query:  IIRALNFECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLAR
        II+ +N    D S+ + ++  +R   P     SF   PR  N  AH +AR
Subjt:  IIRALNFECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLAR

A0A5C7IQ65 RNase H domain-containing protein3.1e-0736.97Show/hide
Query:  RWSPPPPNCYKLNADASWNENLLIGGV--------ALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNFECGDISDSAIVLNDVRFLAPSAGVISFG
        RW  PP    K+N DA+ N  L + G         ALAI EGL+   S   S    + +ESDAL +++A+N +    S+  +VLND+  +      +SF 
Subjt:  RWSPPPPNCYKLNADASWNENLLIGGV--------ALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNFECGDISDSAIVLNDVRFLAPSAGVISFG

Query:  KSPRAGNCVAHCLARAAAN
          PR GN VAH LA+   N
Subjt:  KSPRAGNCVAHCLARAAAN

A0A5N5GG51 RNase H domain-containing protein2.5e-0427.27Show/hide
Query:  RWSPPPPNCYKLNADASWNENLLIGGVALAIKEGLKA--------------YSSYGGSLK--PPLMVESDALEIIRALNFECGDISDSAIVLNDVRFLAP
        +WS PPP   KLN D +WN +  +GG  L I++   +              + S+ G ++    ++ ESD+L+I+  L     + S    ++ D+  L  
Subjt:  RWSPPPPNCYKLNADASWNENLLIGGVALAIKEGLKA--------------YSSYGGSLK--PPLMVESDALEIIRALNFECGDISDSAIVLNDVRFLAP

Query:  SAGVISFGKSPRAGNCVAHCLARAAANLRPVHSLSSTVFWSPP
        +   +S+    R  N +AH LAR    L  +H  +    W PP
Subjt:  SAGVISFGKSPRAGNCVAHCLARAAANLRPVHSLSSTVFWSPP

A0A6J1DNV9 uncharacterized protein LOC1110224031.8e-0729.53Show/hide
Query:  ESLGNHERWSPPPPNCYKLNADASWNENLLIGGV-----------------------------ALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNF
        ++L N  +W PPP + + LNADASW+++   GG+                             A AI EGL+  ++ G  +  PL +E+D+ E+   LN 
Subjt:  ESLGNHERWSPPPPNCYKLNADASWNENLLIGGV-----------------------------ALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNF

Query:  ECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAAANLR
        +  D++ +  V+ ++  L  S  +++F K  R  N  AH LA+ A+ LR
Subjt:  ECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAAANLR

A0A6J1DSV1 uncharacterized protein LOC1110236084.2e-0428.28Show/hide
Query:  RWSPPPPNCYKLNADASWNENLLIGGV-----------------------------ALAIKEGLKAYSSYGGSLKP-------PLMVESDALEIIRALNF
        RW PP  N +KLN DA+W  +   GG+                              +AI EGL+A        +P       P+ +ESD+LE I  L+ 
Subjt:  RWSPPPPNCYKLNADASWNENLLIGGV-----------------------------ALAIKEGLKAYSSYGGSLKP-------PLMVESDALEIIRALNF

Query:  ECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAA
        +C D ++   +L ++  +     ++S     R  N VAH LAR A
Subjt:  ECGDISDSAIVLNDVRFLAPSAGVISFGKSPRAGNCVAHCLARAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCTAAACGAAATTTGGAGGAGCAAAGAAGGCGGTCAATTCCGAACCTGGCAGATTCAAGGCTGGAGAGTCTGGGGAATCATGAGCGCTGGTCTCCCCCACCCCC
TAACTGCTACAAGCTGAACGCGGATGCGTCTTGGAATGAAAATCTGTTGATTGGAGGGGTGGCTCTAGCAATCAAAGAGGGTCTGAAAGCTTACTCGAGTTATGGTGGAT
CATTGAAGCCTCCATTGATGGTTGAATCAGACGCCCTGGAGATCATTCGAGCGCTGAATTTCGAATGTGGAGATATCTCTGACTCCGCAATCGTGCTTAATGATGTGAGA
TTTTTGGCTCCGTCTGCAGGCGTTATCTCGTTCGGGAAAAGCCCTCGGGCTGGTAATTGTGTTGCGCATTGTCTTGCGCGTGCAGCAGCGAATCTTCGGCCGGTGCATTC
CCTGTCGTCGACAGTCTTTTGGAGTCCCCCCTTTCTTCCACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGCTAAACGAAATTTGGAGGAGCAAAGAAGGCGGTCAATTCCGAACCTGGCAGATTCAAGGCTGGAGAGTCTGGGGAATCATGAGCGCTGGTCTCCCCCACCCCC
TAACTGCTACAAGCTGAACGCGGATGCGTCTTGGAATGAAAATCTGTTGATTGGAGGGGTGGCTCTAGCAATCAAAGAGGGTCTGAAAGCTTACTCGAGTTATGGTGGAT
CATTGAAGCCTCCATTGATGGTTGAATCAGACGCCCTGGAGATCATTCGAGCGCTGAATTTCGAATGTGGAGATATCTCTGACTCCGCAATCGTGCTTAATGATGTGAGA
TTTTTGGCTCCGTCTGCAGGCGTTATCTCGTTCGGGAAAAGCCCTCGGGCTGGTAATTGTGTTGCGCATTGTCTTGCGCGTGCAGCAGCGAATCTTCGGCCGGTGCATTC
CCTGTCGTCGACAGTCTTTTGGAGTCCCCCCTTTCTTCCACTTTAA
Protein sequenceShow/hide protein sequence
MWAKRNLEEQRRRSIPNLADSRLESLGNHERWSPPPPNCYKLNADASWNENLLIGGVALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNFECGDISDSAIVLNDVR
FLAPSAGVISFGKSPRAGNCVAHCLARAAANLRPVHSLSSTVFWSPPFLPL