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Spg006511 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006511
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold2:49004531..49007317
RNA-Seq ExpressionSpg006511
SyntenySpg006511
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]1.7e-1230.14Show/hide
Query:  MTIEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTL
        M I   +PCRF RQFGF+QDVP DL    P  +L NV + W IC    TLS+VYLP   L P +  T                 H    +  K   ++  
Subjt:  MTIEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTL

Query:  VFAVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGKRVIEASTRPMNNLHDEEQSHSSSD
             + R  P  I    +   + N  +++  S+   P   Q             F   S     HK+L         ++ +T    + H E+ SHSS+D
Subjt:  VFAVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGKRVIEASTRPMNNLHDEEQSHSSSD

Query:  DRHWKRPEK
        DRHWKRP++
Subjt:  DRHWKRPEK

KAA0053466.1 hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]1.0e-1229.19Show/hide
Query:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTLVF
        I +YSP RF RQFGF+QD+PND+   PP ++L+N+ + WRIC    TLS++YLP R L+P    T+ +             D  T  +   F+       
Subjt:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTLVF

Query:  AVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGK--RVIEASTRPMNNLHDEEQSHSSSD
                              NR   VS            + +P           P ++P+  K   +   GK  R++EA    + +  +E +S S+  
Subjt:  AVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGK--RVIEASTRPMNNLHDEEQSHSSSD

Query:  DRHWKRPEK
        DRHWKRP K
Subjt:  DRHWKRPEK

TYK08186.1 hypothetical protein E5676_scaffold886G00810 [Cucumis melo var. makuwa]3.5e-1354.55Show/hide
Query:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTR
        I +YSP RF RQFGF+QD+PND+   PP ++L+N+ + WRICT   TLS++YLP R L+P   TT+
Subjt:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTR

XP_031739998.1 uncharacterized protein LOC116403342 [Cucumis sativus]5.9e-1330.92Show/hide
Query:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTLVF
        IE YSPCRFSRQFGF+QDVP DL  + P  +  NV + W IC    TLS+VYLP    +P    T  Y      K      +    L  R    H+    
Subjt:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTLVF

Query:  AVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGKRVIEASTRPMNNLHDEEQSHSSSDDR
          K+         +  S  TD    +++        +L     L   +  ++   I +        + TK   KR+              E S SS+DDR
Subjt:  AVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGKRVIEASTRPMNNLHDEEQSHSSSDDR

Query:  HWKRPEK
        HWKRP+K
Subjt:  HWKRPEK

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]5.9e-1330.92Show/hide
Query:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTLVF
        IE YSPCRFSRQFGF+QDVP DL  + P  +  NV + W IC    TLS+VYLP    +P    T  Y      K      +    L  R    H+    
Subjt:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTLVF

Query:  AVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGKRVIEASTRPMNNLHDEEQSHSSSDDR
          K+         +  S  TD    +++        +L     L   +  ++   I +        + TK   KR+              E S SS+DDR
Subjt:  AVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGKRVIEASTRPMNNLHDEEQSHSSSDDR

Query:  HWKRPEK
        HWKRP+K
Subjt:  HWKRPEK

TrEMBL top hitse value%identityAlignment
A0A5A7SHN8 PMD domain-containing protein8.3e-1350Show/hide
Query:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSY
        I +YSP +F RQFGF+QD+PND+   PP ++L+N+ + WRICT   TLS++YLP R L+P    T+ +
Subjt:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSY

A0A5A7TX42 Uncharacterized protein3.2e-1250Show/hide
Query:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSY
        I +YSP RF RQFGF+QD+PND+    P ++L+N+ + WRICT   TLS++YLP R L+P    T+ +
Subjt:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSY

A0A5A7U4C3 Uncharacterized protein8.3e-1330.14Show/hide
Query:  MTIEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTL
        M I   +PCRF RQFGF+QDVP DL    P  +L NV + W IC    TLS+VYLP   L P +  T                 H    +  K   ++  
Subjt:  MTIEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTL

Query:  VFAVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGKRVIEASTRPMNNLHDEEQSHSSSD
             + R  P  I    +   + N  +++  S+   P   Q             F   S     HK+L         ++ +T    + H E+ SHSS+D
Subjt:  VFAVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGKRVIEASTRPMNNLHDEEQSHSSSD

Query:  DRHWKRPEK
        DRHWKRP++
Subjt:  DRHWKRPEK

A0A5A7UGW6 PMD domain-containing protein4.9e-1329.19Show/hide
Query:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTLVF
        I +YSP RF RQFGF+QD+PND+   PP ++L+N+ + WRIC    TLS++YLP R L+P    T+ +             D  T  +   F+       
Subjt:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTLVF

Query:  AVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGK--RVIEASTRPMNNLHDEEQSHSSSD
                              NR   VS            + +P           P ++P+  K   +   GK  R++EA    + +  +E +S S+  
Subjt:  AVKLTRTPPPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGK--RVIEASTRPMNNLHDEEQSHSSSD

Query:  DRHWKRPEK
        DRHWKRP K
Subjt:  DRHWKRPEK

A0A5D3CCU5 PMD domain-containing protein1.7e-1354.55Show/hide
Query:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTR
        I +YSP RF RQFGF+QD+PND+   PP ++L+N+ + WRICT   TLS++YLP R L+P   TT+
Subjt:  IEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATAGAAGCTTACAGCCCTTGTCGATTCAGCCGTCAATTTGGCTTTCACCAGGATGTACCGAATGACTTACATAATGATCCTCCCCCGGTTAGCCTTGAGAATGT
TTTTCATTCTTGGAGAATCTGTACTGCAACTTTGACTTTGTCGAAGGTATACCTCCCAACACGCCTACTAGATCCTCGTGATCAAACCACTCGATCTTATGATAAGTGTG
TAGGGATAAAGCCCCAACGCAGCGGAAACGATCATAAAACCATACTGTATAGCAGAAAATTCCAGCAGCATGTAACTCTTGTTTTCGCTGTGAAATTGACACGAACACCA
CCACCAAGGATTCACCGATATATTTCTGTGTCCACGGATATCAACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGCACCCCAGCTAGGTCAAATTACCGTTTTACC
CCTGGGCTACCTCTTTGTCCTTAATTTTACTATTCCTTCAACTAAGCCCAAACCTCATAAAGAGCTGGATACCAAAAAAGCTGGTAAGAGGGTGATTGAGGCGTCAACTC
GTCCGATGAACAACCTTCATGATGAAGAACAGAGCCATAGCAGCAGTGACGATCGTCATTGGAAAAGGCCAGAAAAGGTACCTTTGGAGGATCATGAAGAATATAGAGTT
GAGAGAACACCAACCTTTGTAGCTCACTTATGTGGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGACAACCTCTAGAGTCTTCCCTACTATTCTCTTGGGCCT
AGAAAGACTTGTGGGAGTCTATAGAAGAAAGATAGAAGGGAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTATAGAAGCTTACAGCCCTTGTCGATTCAGCCGTCAATTTGGCTTTCACCAGGATGTACCGAATGACTTACATAATGATCCTCCCCCGGTTAGCCTTGAGAATGT
TTTTCATTCTTGGAGAATCTGTACTGCAACTTTGACTTTGTCGAAGGTATACCTCCCAACACGCCTACTAGATCCTCGTGATCAAACCACTCGATCTTATGATAAGTGTG
TAGGGATAAAGCCCCAACGCAGCGGAAACGATCATAAAACCATACTGTATAGCAGAAAATTCCAGCAGCATGTAACTCTTGTTTTCGCTGTGAAATTGACACGAACACCA
CCACCAAGGATTCACCGATATATTTCTGTGTCCACGGATATCAACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGCACCCCAGCTAGGTCAAATTACCGTTTTACC
CCTGGGCTACCTCTTTGTCCTTAATTTTACTATTCCTTCAACTAAGCCCAAACCTCATAAAGAGCTGGATACCAAAAAAGCTGGTAAGAGGGTGATTGAGGCGTCAACTC
GTCCGATGAACAACCTTCATGATGAAGAACAGAGCCATAGCAGCAGTGACGATCGTCATTGGAAAAGGCCAGAAAAGGTACCTTTGGAGGATCATGAAGAATATAGAGTT
GAGAGAACACCAACCTTTGTAGCTCACTTATGTGGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGACAACCTCTAGAGTCTTCCCTACTATTCTCTTGGGCCT
AGAAAGACTTGTGGGAGTCTATAGAAGAAAGATAGAAGGGAATGCTTGA
Protein sequenceShow/hide protein sequence
MTIEAYSPCRFSRQFGFHQDVPNDLHNDPPPVSLENVFHSWRICTATLTLSKVYLPTRLLDPRDQTTRSYDKCVGIKPQRSGNDHKTILYSRKFQQHVTLVFAVKLTRTP
PPRIHRYISVSTDINRQQQVSPSRVFAPQLGQITVLPLGYLFVLNFTIPSTKPKPHKELDTKKAGKRVIEASTRPMNNLHDEEQSHSSSDDRHWKRPEKVPLEDHEEYRV
ERTPTFVAHLCGTPCGVCLSYAPWTTSRVFPTILLGLERLVGVYRRKIEGNA