; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006515 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006515
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold2:48239928..48252204
RNA-Seq ExpressionSpg006515
SyntenySpg006515
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064860.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.2e-4186.46Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEEMRHGTTKPDYVTFVN+LSACSHMGLVERGKVYF+MM ++FGIVPRVEHYAC+VD+LSR GKL E KEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

KAE8652031.1 hypothetical protein Csa_018699 [Cucumis sativus]2.2e-4186.46Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEE+RHGTTKPDYVTFVN+LSACSHMGLVERGKVYF+MM +EFGI+PRVEHYAC+VDILSR GKL E KEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

XP_008445308.1 PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Cucumis melo]1.7e-4187.5Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEEMRHGTTKPDYVTFVN+LSACSHMGLVERGKVYF+MM ++FGIVPRVEHYAC+VDILSR GKL E KEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

XP_022144247.1 pentatricopeptide repeat-containing protein At2g33680 [Momordica charantia]5.8e-4290.62Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEEMR GTTKPDYVTFVNILSACSHMGLVERGKVYFKMM +EFGI+PRVEHYAC+VDILSR GKLQEAKEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

XP_038884767.1 pentatricopeptide repeat-containing protein At2g33680 [Benincasa hispida]7.6e-4288.54Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEEMR GTTKPDYVTFVN+LSACSHMGLVERGK+YFKMM +EFGIVPRVEHYAC+VDILSR GKL+EAKEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

TrEMBL top hitse value%identityAlignment
A0A0A0LK41 Uncharacterized protein1.1e-4186.46Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEE+RHGTTKPDYVTFVN+LSACSHMGLVERGKVYF+MM +EFGI+PRVEHYAC+VDILSR GKL E KEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

A0A1S3BCD5 pentatricopeptide repeat-containing protein At2g336808.2e-4287.5Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEEMRHGTTKPDYVTFVN+LSACSHMGLVERGKVYF+MM ++FGIVPRVEHYAC+VDILSR GKL E KEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

A0A5A7VCE6 Pentatricopeptide repeat-containing protein1.1e-4186.46Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEEMRHGTTKPDYVTFVN+LSACSHMGLVERGKVYF+MM ++FGIVPRVEHYAC+VD+LSR GKL E KEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

A0A6J1CT51 pentatricopeptide repeat-containing protein At2g336802.8e-4290.62Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEEMR GTTKPDYVTFVNILSACSHMGLVERGKVYFKMM +EFGI+PRVEHYAC+VDILSR GKLQEAKEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

A0A6J1GHM1 pentatricopeptide repeat-containing protein At2g336803.1e-4189.58Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLSQNGEG KAL+LFEEMR G TKPDYVTFVNILSACSHMGLVERGKVYFKMM +EFGIVPRVEHYAC+VDILSR GKL EAKEFIESAT+DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

SwissProt top hitse value%identityAlignment
P93005 Pentatricopeptide repeat-containing protein At2g336803.1e-3065.62Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLS NG+G +AL+LFEEM     +PD VTFVNI+SACSH G VERG  YF MM ++ G+ P+V+HYAC+VD+LSR G+L+EAKEFIESA +DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

Q9FIB2 Putative pentatricopeptide repeat-containing protein At5g099505.3e-2251.65Show/hide
Query:  MISGLSQNGEGFKALKLFEEMR-HGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIE
        MISG +++G+G +ALKLFE M+  G T PD+VTFV +LSACSH GL+E G  +F+ M + +G+ PR+EH++C+ D+L R G+L + ++FIE
Subjt:  MISGLSQNGEGFKALKLFEEMR-HGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIE

Q9SI53 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial1.7e-2044.83Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIE--SATVDHVE
        MISGL+QNG   +ALKLFE M+   TKP+Y+T V +L ACSH GL+E G  YF+ M   +GI P  EHY C++D+L + GKL +A + +       D V 
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIE--SATVDHVE

Query:  VFKLHGRDKAARNVLI
           L G  +  RN+++
Subjt:  VFKLHGRDKAARNVLI

Q9SIT7 Pentatricopeptide repeat-containing protein At2g136003.1e-2241.67Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV--DHVE
        MI G +QNG G +AL+LF EM     KPD++T + +LSAC H G VE G+ YF  M  +FG+ P  +HY C+VD+L R G L+EAK  IE   +  D V 
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV--DHVE

Query:  VFKLHGRDKAARNVLIFGKHFPARFVSIHAVN
           L    K  RN+ + GK+   + + +   N
Subjt:  VFKLHGRDKAARNVLIFGKHFPARFVSIHAVN

Q9SVP7 Pentatricopeptide repeat-containing protein At4g136505.9e-2146.81Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV
        +I+  S++G G +AL  F++M H   +P++VT V +LSACSH+GLV++G  YF+ M +E+G+ P+ EHY C+VD+L+R G L  AKEFI+   +
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV

Arabidopsis top hitse value%identityAlignment
AT1G13410.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.9e-2449.12Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV--DHVE
        MI+GL+ +G G +AL LF EM++    PD VTFV +L AC HMGLVE G  YF  MF +F I+P +EH  C+VD+LSR G L +A EFI    V  D V 
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV--DHVE

Query:  VFKLHGRDKAARNV
           L G  K  + V
Subjt:  VFKLHGRDKAARNV

AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein2.2e-2341.67Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV--DHVE
        MI G +QNG G +AL+LF EM     KPD++T + +LSAC H G VE G+ YF  M  +FG+ P  +HY C+VD+L R G L+EAK  IE   +  D V 
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV--DHVE

Query:  VFKLHGRDKAARNVLIFGKHFPARFVSIHAVN
           L    K  RN+ + GK+   + + +   N
Subjt:  VFKLHGRDKAARNVLIFGKHFPARFVSIHAVN

AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-3165.62Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH
        MISGLS NG+G +AL+LFEEM     +PD VTFVNI+SACSH G VERG  YF MM ++ G+ P+V+HYAC+VD+LSR G+L+EAKEFIESA +DH
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDH

AT4G13650.1 Pentatricopeptide repeat (PPR) superfamily protein4.2e-2246.81Show/hide
Query:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV
        +I+  S++G G +AL  F++M H   +P++VT V +LSACSH+GLV++G  YF+ M +E+G+ P+ EHY C+VD+L+R G L  AKEFI+   +
Subjt:  MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATV

AT5G09950.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.8e-2351.65Show/hide
Query:  MISGLSQNGEGFKALKLFEEMR-HGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIE
        MISG +++G+G +ALKLFE M+  G T PD+VTFV +LSACSH GL+E G  +F+ M + +G+ PR+EH++C+ D+L R G+L + ++FIE
Subjt:  MISGLSQNGEGFKALKLFEEMR-HGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATCTGGTCTTTCTCAAAATGGAGAGGGTTTTAAAGCTCTTAAACTCTTTGAAGAGATGCGGCATGGCACCACGAAACCTGACTATGTTACTTTTGTGAACATTCT
TTCTGCTTGTAGCCACATGGGATTGGTGGAAAGAGGTAAGGTCTATTTTAAGATGATGTTTAATGAGTTTGGCATTGTTCCACGAGTTGAGCATTATGCTTGCATTGTAG
ATATTCTGAGTCGTGTAGGTAAGCTACAGGAAGCCAAAGAGTTCATAGAATCTGCAACTGTTGATCATGTCGAGGTTTTTAAACTCCATGGTCGTGATAAAGCTGCCCGG
AATGTCCTCATTTTTGGAAAACACTTTCCAGCTCGGTTTGTGAGCATCCATGCGGTGAATGTCTACCTCAAGGACAAGATTTTCCCCTTCCTAAAAGATGGTGCAACACC
ATTCCAATCACCATTAAGAACGACATTGAAGTTGTTTATTTTGGGGCTAAAATCTTATTTGCCACCCACGACAAATTCTCTTTATTTTGCCCACCCCGGTTTGCAGGTCG
GTCTGTTCTTTGCCACCGTCTGCCACCTCATGCTCTATAACCCCCCTCCTCCTTCGTCTGCTCCCTCTCCGCGTTTCGCTCCCTCTTTCTCGTTTTCTTCCTCTTCAATC
CGAGGAGTAAGTCTGATGAGCAAGCCCCCTACGCCGCAACCATCTTTCTCCCCTCGAGTTCCTCTGCTTCAGCGTGCAAACCGCAACGCTTGGAGCGTGGACCACGCGTG
CAGCAGAGTTGGCATCCTCCACGCGGCGCTAGCTCGGCCAAGACCCGCAACAGAGCATGGCTTGGTGCTTTGTAGCAGCATCTTGCAGACTTCGTCGAAACTGCAGGATT
CAGCCTCATTAGTCCGCTGTCCAGCGGCAAATTGGACCCAAAGTGGGCCTTTGGGCGCCCACAAGCTGATCGACCTCGAGTTGAAGTGCCCTTGGTCTAACGGCTTTAGA
CGCCTTTCTTGGAGCTTTTCGATCACTGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATATCTGGTCTTTCTCAAAATGGAGAGGGTTTTAAAGCTCTTAAACTCTTTGAAGAGATGCGGCATGGCACCACGAAACCTGACTATGTTACTTTTGTGAACATTCT
TTCTGCTTGTAGCCACATGGGATTGGTGGAAAGAGGTAAGGTCTATTTTAAGATGATGTTTAATGAGTTTGGCATTGTTCCACGAGTTGAGCATTATGCTTGCATTGTAG
ATATTCTGAGTCGTGTAGGTAAGCTACAGGAAGCCAAAGAGTTCATAGAATCTGCAACTGTTGATCATGTCGAGGTTTTTAAACTCCATGGTCGTGATAAAGCTGCCCGG
AATGTCCTCATTTTTGGAAAACACTTTCCAGCTCGGTTTGTGAGCATCCATGCGGTGAATGTCTACCTCAAGGACAAGATTTTCCCCTTCCTAAAAGATGGTGCAACACC
ATTCCAATCACCATTAAGAACGACATTGAAGTTGTTTATTTTGGGGCTAAAATCTTATTTGCCACCCACGACAAATTCTCTTTATTTTGCCCACCCCGGTTTGCAGGTCG
GTCTGTTCTTTGCCACCGTCTGCCACCTCATGCTCTATAACCCCCCTCCTCCTTCGTCTGCTCCCTCTCCGCGTTTCGCTCCCTCTTTCTCGTTTTCTTCCTCTTCAATC
CGAGGAGTAAGTCTGATGAGCAAGCCCCCTACGCCGCAACCATCTTTCTCCCCTCGAGTTCCTCTGCTTCAGCGTGCAAACCGCAACGCTTGGAGCGTGGACCACGCGTG
CAGCAGAGTTGGCATCCTCCACGCGGCGCTAGCTCGGCCAAGACCCGCAACAGAGCATGGCTTGGTGCTTTGTAGCAGCATCTTGCAGACTTCGTCGAAACTGCAGGATT
CAGCCTCATTAGTCCGCTGTCCAGCGGCAAATTGGACCCAAAGTGGGCCTTTGGGCGCCCACAAGCTGATCGACCTCGAGTTGAAGTGCCCTTGGTCTAACGGCTTTAGA
CGCCTTTCTTGGAGCTTTTCGATCACTGGATAG
Protein sequenceShow/hide protein sequence
MISGLSQNGEGFKALKLFEEMRHGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMFNEFGIVPRVEHYACIVDILSRVGKLQEAKEFIESATVDHVEVFKLHGRDKAAR
NVLIFGKHFPARFVSIHAVNVYLKDKIFPFLKDGATPFQSPLRTTLKLFILGLKSYLPPTTNSLYFAHPGLQVGLFFATVCHLMLYNPPPPSSAPSPRFAPSFSFSSSSI
RGVSLMSKPPTPQPSFSPRVPLLQRANRNAWSVDHACSRVGILHAALARPRPATEHGLVLCSSILQTSSKLQDSASLVRCPAANWTQSGPLGAHKLIDLELKCPWSNGFR
RLSWSFSITG