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Spg006520 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006520
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:49141507..49153221
RNA-Seq ExpressionSpg006520
SyntenySpg006520
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-2038.39Show/hide
Query:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF-----------------RPRGNRSGLQTRKLAKT--------------------------
        +++ NQKLYL    REPRI + C+      + W     SF                  PRGNR  LQT ++ KT                          
Subjt:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF-----------------RPRGNRSGLQTRKLAKT--------------------------

Query:  ----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIGQ--RVSLEE----------------DDVRWLHAIFRTELAGG
                              VEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+    +V L+                 DDV WLHAIFR + AGG
Subjt:  ----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIGQ--RVSLEE----------------DDVRWLHAIFRTELAGG

Query:  PGGGVTTWYQS
        PGGGVTTWYQS
Subjt:  PGGGVTTWYQS

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.3e-1955.34Show/hide
Query:  SFRPRGNRSGLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------------GQRVSLEEDDVRWLHAIFRTELAGGPG
        S  PRGNR  L T KL KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+                   G    +  DD+ WLHA+F  + AG PG
Subjt:  SFRPRGNRSGLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------------GQRVSLEEDDVRWLHAIFRTELAGGPG

Query:  GGV
        GGV
Subjt:  GGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.4e-1943.9Show/hide
Query:  LYQLNQKLYLDSREPRICVVCVRGNSGQIGWESRFHSFRPRGNRSGLQTRKLAKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYI
        +++ NQKLYL        V+ VR     I       S  PRGNR  LQTR+L KT               V IELPVPD LPTSAESS S+SSTW+ELY 
Subjt:  LYQLNQKLYLDSREPRICVVCVRGNSGQIGWESRFHSFRPRGNRSGLQTRKLAKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYI

Query:  ESVH----------------------IGQRVSLEEDDVRWLHAIFRTELAGGPGGGVTTWYQSS
        ESVH                      +G    +  DDV WLHA+FR +  GGPGGGVTTW  S+
Subjt:  ESVH----------------------IGQRVSLEEDDVRWLHAIFRTELAGGPGGGVTTWYQSS

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]4.8e-2041.9Show/hide
Query:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF---------------RPRGNRSGLQTRKLAKT-----------------VEIELPVPDTL
        +++ NQKLYL    REPRI + C+        W     SF                PRGNRS LQT +L KT                 VEIELPVPDTL
Subjt:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF---------------RPRGNRSGLQTRKLAKT-----------------VEIELPVPDTL

Query:  PTSAESSRSSSSTWVELYIESVHI-------------------GQRVSLEEDDVRWLHAIFRTELAGGPGGGVTTWYQS
        PTSAES  S+SSTW+ELY E VH+                   G    +  DDV WLH +FR ++AGGPGGGVT   QS
Subjt:  PTSAESSRSSSSTWVELYIESVHI-------------------GQRVSLEEDDVRWLHAIFRTELAGGPGGGVTTWYQS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-2038.39Show/hide
Query:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF-----------------RPRGNRSGLQTRKLAKT--------------------------
        +++ NQKLYL    REPRI + C+      + W     SF                  PRGNR  LQT ++ KT                          
Subjt:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF-----------------RPRGNRSGLQTRKLAKT--------------------------

Query:  ----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIGQ--RVSLEE----------------DDVRWLHAIFRTELAGG
                              VEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+    +V L+                 DDV WLHAIFR + AGG
Subjt:  ----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIGQ--RVSLEE----------------DDVRWLHAIFRTELAGG

Query:  PGGGVTTWYQS
        PGGGVTTWYQS
Subjt:  PGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase8.0e-2138.39Show/hide
Query:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF-----------------RPRGNRSGLQTRKLAKT--------------------------
        +++ NQKLYL    REPRI + C+      + W     SF                  PRGNR  LQT ++ KT                          
Subjt:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF-----------------RPRGNRSGLQTRKLAKT--------------------------

Query:  ----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIGQ--RVSLEE----------------DDVRWLHAIFRTELAGG
                              VEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+    +V L+                 DDV WLHAIFR + AGG
Subjt:  ----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIGQ--RVSLEE----------------DDVRWLHAIFRTELAGG

Query:  PGGGVTTWYQS
        PGGGVTTWYQS
Subjt:  PGGGVTTWYQS

A0A5A7UAH6 CCHC-type domain-containing protein2.6e-1955.34Show/hide
Query:  SFRPRGNRSGLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------------GQRVSLEEDDVRWLHAIFRTELAGGPG
        S  PRGNR  L T KL KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+                   G    +  DD+ WLHA+F  + AG PG
Subjt:  SFRPRGNRSGLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------------GQRVSLEEDDVRWLHAIFRTELAGGPG

Query:  GGV
        GGV
Subjt:  GGV

A0A5A7UT17 CCHC-type domain-containing protein1.2e-1943.9Show/hide
Query:  LYQLNQKLYLDSREPRICVVCVRGNSGQIGWESRFHSFRPRGNRSGLQTRKLAKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYI
        +++ NQKLYL        V+ VR     I       S  PRGNR  LQTR+L KT               V IELPVPD LPTSAESS S+SSTW+ELY 
Subjt:  LYQLNQKLYLDSREPRICVVCVRGNSGQIGWESRFHSFRPRGNRSGLQTRKLAKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYI

Query:  ESVH----------------------IGQRVSLEEDDVRWLHAIFRTELAGGPGGGVTTWYQSS
        ESVH                      +G    +  DDV WLHA+FR +  GGPGGGVTTW  S+
Subjt:  ESVH----------------------IGQRVSLEEDDVRWLHAIFRTELAGGPGGGVTTWYQSS

A0A5A7VIY9 Uncharacterized protein2.3e-2041.9Show/hide
Query:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF---------------RPRGNRSGLQTRKLAKT-----------------VEIELPVPDTL
        +++ NQKLYL    REPRI + C+        W     SF                PRGNRS LQT +L KT                 VEIELPVPDTL
Subjt:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF---------------RPRGNRSGLQTRKLAKT-----------------VEIELPVPDTL

Query:  PTSAESSRSSSSTWVELYIESVHI-------------------GQRVSLEEDDVRWLHAIFRTELAGGPGGGVTTWYQS
        PTSAES  S+SSTW+ELY E VH+                   G    +  DDV WLH +FR ++AGGPGGGVT   QS
Subjt:  PTSAESSRSSSSTWVELYIESVHI-------------------GQRVSLEEDDVRWLHAIFRTELAGGPGGGVTTWYQS

A0A5D3BTP3 Reverse transcriptase8.0e-2138.39Show/hide
Query:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF-----------------RPRGNRSGLQTRKLAKT--------------------------
        +++ NQKLYL    REPRI + C+      + W     SF                  PRGNR  LQT ++ KT                          
Subjt:  LYQLNQKLYL--DSREPRICVVCVRGNSGQIGWESRFHSF-----------------RPRGNRSGLQTRKLAKT--------------------------

Query:  ----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIGQ--RVSLEE----------------DDVRWLHAIFRTELAGG
                              VEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+    +V L+                 DDV WLHAIFR + AGG
Subjt:  ----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIGQ--RVSLEE----------------DDVRWLHAIFRTELAGG

Query:  PGGGVTTWYQS
        PGGGVTTWYQS
Subjt:  PGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAGAGTTCTAGAGTCTATTTCTTACAACATTTTCACCCACTCTGGAAACCCAACAGCCACCCAGCCCCTGCTCGCCCCTCGGATGACTTACCTGCTTACCCCCTC
AACCGCTCCCACCACAAGCACCTGGTCACTCTCCCTCGGTAGCTCAGCCACAGAGGAGAAAGATCGTGATTTGCTTCTCAAGGTGTTGGTGAAACCTTCCAGAGCCGTCA
ACGAAGATTTGTCTGTGATTACGGACACTTGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAGTTAT
AGCGGGGAAGATCAAATGGTGGTGTCTGTTGAAGAATTCAGAGTCGTCAGACGGAGGACGGTTCGAACTCGCGTGCATCAGGCAATTTCGGGCGATCAGATACTTCGAGG
GCGGAGGTTCGAACTTGATCGTGAGCAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTAGAAGAAGATAGGAAAAGCTCATGCAAAG
CCAGGCATAGCAGAATCCGAGTTCAACCAGTCAACCTCTGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGCTGTACCAGTTG
AATCAGAAGCTCTATTTGGATAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTCCTTCCGGCCAAG
AGGAAATAGGTCGGGTCTACAAACCAGGAAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCA
GTACGTGGGTGGAGTTGTATATTGAGTCCGTCCATATTGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTTCGAACTGAGTTAGCAGGT
GGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCAGAGTTCTAGAGTCTATTTCTTACAACATTTTCACCCACTCTGGAAACCCAACAGCCACCCAGCCCCTGCTCGCCCCTCGGATGACTTACCTGCTTACCCCCTC
AACCGCTCCCACCACAAGCACCTGGTCACTCTCCCTCGGTAGCTCAGCCACAGAGGAGAAAGATCGTGATTTGCTTCTCAAGGTGTTGGTGAAACCTTCCAGAGCCGTCA
ACGAAGATTTGTCTGTGATTACGGACACTTGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAGTTAT
AGCGGGGAAGATCAAATGGTGGTGTCTGTTGAAGAATTCAGAGTCGTCAGACGGAGGACGGTTCGAACTCGCGTGCATCAGGCAATTTCGGGCGATCAGATACTTCGAGG
GCGGAGGTTCGAACTTGATCGTGAGCAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTAGAAGAAGATAGGAAAAGCTCATGCAAAG
CCAGGCATAGCAGAATCCGAGTTCAACCAGTCAACCTCTGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGCTGTACCAGTTG
AATCAGAAGCTCTATTTGGATAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTCCTTCCGGCCAAG
AGGAAATAGGTCGGGTCTACAAACCAGGAAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCA
GTACGTGGGTGGAGTTGTATATTGAGTCCGTCCATATTGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTTCGAACTGAGTTAGCAGGT
GGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MLRVLESISYNIFTHSGNPTATQPLLAPRMTYLLTPSTAPTTSTWSLSLGSSATEEKDRDLLLKVLVKPSRAVNEDLSVITDTCEGLTYRHRSTSMDTEMFYSEKSSASY
SGEDQMVVSVEEFRVVRRRTVRTRVHQAISGDQILRGRRFELDREQHLRERVKEEEEDFRGFEVEEDRKSSCKARHSRIRVQPVNLWIFVQTRRISGVLWCFEHSGLYQL
NQKLYLDSREPRICVVCVRGNSGQIGWESRFHSFRPRGNRSGLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIGQRVSLEEDDVRWLHAIFRTELAG
GPGGGVTTWYQSS