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Spg006584 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006584
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:48314511..48315020
RNA-Seq ExpressionSpg006584
SyntenySpg006584
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7823154.1 putative WRKY transcription factor 31 [Senna tora]4.2e-0945.45Show/hide
Query:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL
        +WSPP   +WKLN D ACS  P   +IG I RN  G  ++  S  +     A   ELWAI  GI LA++LGC  L +ESD   A N L
Subjt:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL

KAF7827683.1 reverse transcriptase [Senna tora]5.5e-0944.32Show/hide
Query:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL
        +W+PP   +WKLN+D ACS  P   +IG I RN  G  ++  S  I     A   ELW I  GI LA+ LGCT+L +E+D   A N L
Subjt:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL

KAF7830619.1 Trimethylguanosine synthase [Senna tora]1.4e-0942.86Show/hide
Query:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFLEGN
        +W PP  ++WKLN D ACS  P   +IG I R+H G  ++  S+ I     A   ELWAI  G+ +A SL C  + VESD   A+ FL+ N
Subjt:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFLEGN

KAF7844846.1 reverse transcriptase [Senna tora]4.2e-0940.66Show/hide
Query:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFLEGN
        +W PP  ++WKLN + ACS  P   +IG + RNH G  ++  S+ I     A   ELWAI  G+ +A SL C  + VESD   A+N L  +
Subjt:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFLEGN

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]3.2e-0939.39Show/hide
Query:  NMNPVGLDNVDRWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL
        N N  G D V+ W+PP+ D+ K+N D AC    S + IGV+C+N +G+I+ A    ++V  E    E  AI EG+ L   L    + V+SD QN+IN +
Subjt:  NMNPVGLDNVDRWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL

TrEMBL top hitse value%identityAlignment
A0A0A9ABQ0 RNase H domain-containing protein2.3e-0842.55Show/hide
Query:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQ---NAINFLEGN
        +WSPP GD+ K NAD A       S  GVI R++ G+ +A   + ++ +M+A + EL AI E I +A  LG   LVVESD Q    A+N  EG+
Subjt:  RWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQ---NAINFLEGN

A0A446LAF2 RNase H domain-containing protein1.3e-0832Show/hide
Query:  VNMNPVGLDNVDRWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL
        ++ +P      D W  P  D+ KLN D    S+   ++ G + R+H GK +AAA+  +++  ++   E  A+  G+ LAN++GC+K+ V SD    +N L
Subjt:  VNMNPVGLDNVDRWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL

A0A6J1DJL6 uncharacterized protein LOC1110217111.6e-0939.39Show/hide
Query:  NMNPVGLDNVDRWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL
        N N  G D V+ W+PP+ D+ K+N D AC    S + IGV+C+N +G+I+ A    ++V  E    E  AI EG+ L   L    + V+SD QN+IN +
Subjt:  NMNPVGLDNVDRWSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL

Q2HX35 Uncharacterized protein1.3e-0840.23Show/hide
Query:  WSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL
        WSPP   F KLN+D AC S   ++S G + RN  G  +A  + +I     + L ELW + EG+LLA + G TKL+ E+D +  +  L
Subjt:  WSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL

Q2HX37 Uncharacterized protein1.3e-0840.23Show/hide
Query:  WSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL
        WSPP   F KLN+D AC S   ++S G + RN  G  +A  + +I     + L ELW + EG+LLA + G TKL+ E+D +  +  L
Subjt:  WSPPNGDFWKLNADFACSSEPSMSSIGVICRNHEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAAACCGAAGAAACCAAATTTTTTTAAAAAACCAGACCGAACCAGTCAGTTCGGTTCGGTCCGGTTCGGTTTGTCGGTTCAGTTCGGTTTTTGCTCACTCCTAAT
TCAAATCAGGAGCAAGTGGATTAGGGATTACCTTGAATCCTTCCGACGTTCAAATTCTCGTTCTTCGTCAGGCAGGCAGATCGGTGTTAATATGAATCCGGTTGGTTTGG
ATAATGTTGATCGATGGAGTCCTCCAAATGGAGATTTCTGGAAGCTTAACGCTGATTTTGCATGTTCTTCAGAGCCTTCGATGTCTAGTATCGGGGTGATTTGCAGAAAC
CATGAGGGGAAGATTTTGGCCGCAGCTTCAAATTCGATAAATGTGGTTATGGAGGCCCATTTAGGTGAACTATGGGCCATTCATGAGGGTATCTTGTTGGCCAATTCTTT
GGGTTGTACAAAGCTTGTGGTGGAATCTGACTATCAAAACGCCATCAATTTTTTGGAGGGTAATCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTAAACCGAAGAAACCAAATTTTTTTAAAAAACCAGACCGAACCAGTCAGTTCGGTTCGGTCCGGTTCGGTTTGTCGGTTCAGTTCGGTTTTTGCTCACTCCTAAT
TCAAATCAGGAGCAAGTGGATTAGGGATTACCTTGAATCCTTCCGACGTTCAAATTCTCGTTCTTCGTCAGGCAGGCAGATCGGTGTTAATATGAATCCGGTTGGTTTGG
ATAATGTTGATCGATGGAGTCCTCCAAATGGAGATTTCTGGAAGCTTAACGCTGATTTTGCATGTTCTTCAGAGCCTTCGATGTCTAGTATCGGGGTGATTTGCAGAAAC
CATGAGGGGAAGATTTTGGCCGCAGCTTCAAATTCGATAAATGTGGTTATGGAGGCCCATTTAGGTGAACTATGGGCCATTCATGAGGGTATCTTGTTGGCCAATTCTTT
GGGTTGTACAAAGCTTGTGGTGGAATCTGACTATCAAAACGCCATCAATTTTTTGGAGGGTAATCCTTAG
Protein sequenceShow/hide protein sequence
MPKPKKPNFFKKPDRTSQFGSVRFGLSVQFGFCSLLIQIRSKWIRDYLESFRRSNSRSSSGRQIGVNMNPVGLDNVDRWSPPNGDFWKLNADFACSSEPSMSSIGVICRN
HEGKILAAASNSINVVMEAHLGELWAIHEGILLANSLGCTKLVVESDYQNAINFLEGNP