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Spg006592 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006592
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein CHROMATIN REMODELING 20 isoform X4
Genome locationscaffold7:47886098..47887319
RNA-Seq ExpressionSpg006592
SyntenySpg006592
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06566.1 Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa]3.0e-0452.5Show/hide
Query:  YSMRHQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG
        +     + ++G+GGW+ IK LPLD+W RK+FE IG YFGG
Subjt:  YSMRHQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG
XP_031738083.1 uncharacterized protein LOC116402658 [Cucumis sativus]4.0e-0456.1Show/hide
Query:  SMRHQR--FIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG
        +M+H R   ++GYGGW+ +K LPLD W R  FEAIG +FGG
Subjt:  SMRHQR--FIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG
XP_038904899.1 uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida]1.4e-0466.67Show/hide
Query:  FIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG
        ++ GYGGWI IK LPLD+W +++FEAIG YFGG
Subjt:  FIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG
TrEMBL top hitse value%identityAlignment
A0A5D3BJ01 Protein CHROMATIN REMODELING 20 isoform X49.5e-0438.75Show/hide
Query:  HQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGGSDLKEHSIPSNIPHVDDDSSVAHP-------PKTIQEENSLVRN
        H   + GY GWI ++ LPLD+W RK FEA GAYFGG    E  +   + H  D+   A         PK   E ++  RN
Subjt:  HQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGGSDLKEHSIPSNIPHVDDDSSVAHP-------PKTIQEENSLVRN
A0A5D3C8A5 Fanconi anemia group M protein isoform X61.5e-0452.5Show/hide
Query:  YSMRHQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG
        +     + ++G+GGW+ IK LPLD+W RK+FE IG YFGG
Subjt:  YSMRHQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGACGTTGAGCATTCAAAAATTTCGAGATTGATCCATCAAGATGAATCCCTCAAGAGTCTTAAAGTCCCATTATCAGTATCTCATCCTTCATCTGAATTATCATT
ATCTACGGTAATTGAAAACTCTATCAGTTATGCAGAGGCTTTAAAGAATATTCCAAAGTCAGATGATGGTGTTTCATTGGAAACAAATCCAGTTTCCGGCATTCCTCAGG
CATCTTATTCGATGAGGCATCAAAGATTCATTGAGGGTTATGGTGGATGGATTGTGATTAAGTATCTGCCTTTAGATTTTTGGGGTCGAAAATCTTTTGAAGCAATTGGG
GCTTATTTTGGAGGATCAGATTTGAAAGAGCATTCAATTCCATCAAATATTCCTCATGTTGATGATGACTCTTCGGTTGCTCATCCTCCTAAAACTATTCAGGAAGAAAA
TTCACTAGTGAGAAATCAGTCTGTTGAAGTTGCTTTAATTGAATATGATGTCTGGATGAGTGTGAACGTTAGTGGTGTGTTTCCAAAGCTGGTAATAAATGAGAAAGAGA
AGGAACCATTAATATGGTTGAACCTATTGGAGCCCCCACAACCTGAACCTATTCTTAGGACGGTTAGAGTTGGAAATCCCTCTCGGGATGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAGACGTTGAGCATTCAAAAATTTCGAGATTGATCCATCAAGATGAATCCCTCAAGAGTCTTAAAGTCCCATTATCAGTATCTCATCCTTCATCTGAATTATCATT
ATCTACGGTAATTGAAAACTCTATCAGTTATGCAGAGGCTTTAAAGAATATTCCAAAGTCAGATGATGGTGTTTCATTGGAAACAAATCCAGTTTCCGGCATTCCTCAGG
CATCTTATTCGATGAGGCATCAAAGATTCATTGAGGGTTATGGTGGATGGATTGTGATTAAGTATCTGCCTTTAGATTTTTGGGGTCGAAAATCTTTTGAAGCAATTGGG
GCTTATTTTGGAGGATCAGATTTGAAAGAGCATTCAATTCCATCAAATATTCCTCATGTTGATGATGACTCTTCGGTTGCTCATCCTCCTAAAACTATTCAGGAAGAAAA
TTCACTAGTGAGAAATCAGTCTGTTGAAGTTGCTTTAATTGAATATGATGTCTGGATGAGTGTGAACGTTAGTGGTGTGTTTCCAAAGCTGGTAATAAATGAGAAAGAGA
AGGAACCATTAATATGGTTGAACCTATTGGAGCCCCCACAACCTGAACCTATTCTTAGGACGGTTAGAGTTGGAAATCCCTCTCGGGATGGTTAA
Protein sequenceShow/hide protein sequence
MIDVEHSKISRLIHQDESLKSLKVPLSVSHPSSELSLSTVIENSISYAEALKNIPKSDDGVSLETNPVSGIPQASYSMRHQRFIEGYGGWIVIKYLPLDFWGRKSFEAIG
AYFGGSDLKEHSIPSNIPHVDDDSSVAHPPKTIQEENSLVRNQSVEVALIEYDVWMSVNVSGVFPKLVINEKEKEPLIWLNLLEPPQPEPILRTVRVGNPSRDG