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Spg006598 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006598
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:47583471..47584342
RNA-Seq ExpressionSpg006598
SyntenySpg006598
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]6.3e-2565Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQ--------------TRFNVSVGSTGIVRGDDICWFHAVFQAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ + WLELY ESV  +                FNVSVGSTGIVRGDD+CW HAVF+ K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQ--------------TRFNVSVGSTGIVRGDDICWFHAVFQAKLAGGPG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-2261.17Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS WLELY+E V  +  +       GIVR DD+CW HAVF+AK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG

Query:  GPG
        GPG
Subjt:  GPG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.0e-1956.86Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +    +  +     FN+SV STGIVRGDD+CW HAVF+AK  G
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG

Query:  GP
        GP
Subjt:  GP

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-2055.75Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVS-----------VGSTGIVRGDDICW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SS WLELY+ESV  +  F               GS GIVRGDD+CW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVS-----------VGSTGIVRGDDICW

Query:  FHAVFQAKLAGGP
         HAVF+AK AGGP
Subjt:  FHAVFQAKLAGGP

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-2261.17Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS WLELY+E V  +  +       GIVR DD+CW HAVF+AK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG

Query:  GPG
        GPG
Subjt:  GPG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein3.0e-2565Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQ--------------TRFNVSVGSTGIVRGDDICWFHAVFQAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ + WLELY ESV  +                FNVSVGSTGIVRGDD+CW HAVF+ K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQ--------------TRFNVSVGSTGIVRGDDICWFHAVFQAKLAGGPG

A0A5A7VMG9 Reverse transcriptase1.1e-2261.17Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS WLELY+E V  +  +       GIVR DD+CW HAVF+AK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG

Query:  GPG
        GPG
Subjt:  GPG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.5e-1956.86Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +    +  +     FN+SV STGIVRGDD+CW HAVF+AK  G
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG

Query:  GP
        GP
Subjt:  GP

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.7e-2055.75Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVS-----------VGSTGIVRGDDICW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SS WLELY+ESV  +  F               GS GIVRGDD+CW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVS-----------VGSTGIVRGDDICW

Query:  FHAVFQAKLAGGP
         HAVF+AK AGGP
Subjt:  FHAVFQAKLAGGP

A0A5D3DX39 Reverse transcriptase1.1e-2261.17Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS WLELY+E V  +  +       GIVR DD+CW HAVF+AK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAG

Query:  GPG
        GPG
Subjt:  GPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTATGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATATCTGTTGGTTTC
ACGCCGTCTTTCAGGCTAAGCTAGCAGGTGGTCCGGGAAGG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTATGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATATCTGTTGGTTTC
ACGCCGTCTTTCAGGCTAAGCTAGCAGGTGGTCCGGGAAGG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSMWLELYIESVTFQTRFNVSVGSTGIVRGDDICWFHAVFQAKLAGGPGR