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Spg006599 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006599
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold7:47822864..47824734
RNA-Seq ExpressionSpg006599
SyntenySpg006599
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040209.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1259.38Show/hide
Query:  PKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS
        PKK +FFIW+VI  RVNT+DRL R+  S+I  FCC+LC   +EDLDH+ W C FAR+V  S LS
Subjt:  PKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS

KAA0067918.1 hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]3.3e-1451.76Show/hide
Query:  ESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSL-SYDLQFARHKSLREMIEEF
        E  ++V+FFIWQV+ GRVNT+DRL RK    +G FCC+LC  A+EDLDH+   C +AR V  S L    + FA  +S+R  IEEF
Subjt:  ESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSL-SYDLQFARHKSLREMIEEF

TYK04295.1 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cucumis melo var. makuwa]3.3e-1451.76Show/hide
Query:  ESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLSYD-LQFARHKSLREMIEEF
        E  ++V+FFIWQV+ GRVNT+DRL RK    +G FCC+LC  A+EDLDH+   C +AR V  S L    + FA  +S+R  IEEF
Subjt:  ESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLSYD-LQFARHKSLREMIEEF

TYK06215.1 peroxin Pex14 isoform X3 [Cucumis melo var. makuwa]5.2e-1245.45Show/hide
Query:  KCDFAGAAWSCFFEMFDFHFV---GESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS-YDLQFARH
        K  F        FE+  F  +   G  PKKV+FFIWQ + G+VNT+DRL R+  S+ G FCC L   A+EDLDH  W C +AR V  S L    + FA  
Subjt:  KCDFAGAAWSCFFEMFDFHFV---GESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS-YDLQFARH

Query:  KSLREMIEEF
         S+R  IEEF
Subjt:  KSLREMIEEF

TYK07871.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.7e-1353.85Show/hide
Query:  FEMFDFHFVGES--PKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS
        F + D   VG++  PKK +FFIW+VI  RVNT+DRL R+  S+I  FCC+LC   +EDLDH+ W C FAR+V  S LS
Subjt:  FEMFDFHFVGES--PKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS

TrEMBL top hitse value%identityAlignment
A0A5A7TG20 Ty3-gypsy retrotransposon protein6.7e-1359.38Show/hide
Query:  PKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS
        PKK +FFIW+VI  RVNT+DRL R+  S+I  FCC+LC   +EDLDH+ W C FAR+V  S LS
Subjt:  PKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS

A0A5A7VJE4 zf-RVT domain-containing protein1.6e-1451.76Show/hide
Query:  ESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSL-SYDLQFARHKSLREMIEEF
        E  ++V+FFIWQV+ GRVNT+DRL RK    +G FCC+LC  A+EDLDH+   C +AR V  S L    + FA  +S+R  IEEF
Subjt:  ESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSL-SYDLQFARHKSLREMIEEF

A0A5D3BYR2 Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X21.6e-1451.76Show/hide
Query:  ESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLSYD-LQFARHKSLREMIEEF
        E  ++V+FFIWQV+ GRVNT+DRL RK    +G FCC+LC  A+EDLDH+   C +AR V  S L    + FA  +S+R  IEEF
Subjt:  ESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLSYD-LQFARHKSLREMIEEF

A0A5D3C4A7 Peroxin Pex14 isoform X32.5e-1245.45Show/hide
Query:  KCDFAGAAWSCFFEMFDFHFV---GESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS-YDLQFARH
        K  F        FE+  F  +   G  PKKV+FFIWQ + G+VNT+DRL R+  S+ G FCC L   A+EDLDH  W C +AR V  S L    + FA  
Subjt:  KCDFAGAAWSCFFEMFDFHFV---GESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS-YDLQFARH

Query:  KSLREMIEEF
         S+R  IEEF
Subjt:  KSLREMIEEF

A0A5D3C7M9 Ty3-gypsy retrotransposon protein2.3e-1353.85Show/hide
Query:  FEMFDFHFVGES--PKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS
        F + D   VG++  PKK +FFIW+VI  RVNT+DRL R+  S+I  FCC+LC   +EDLDH+ W C FAR+V  S LS
Subjt:  FEMFDFHFVGES--PKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAACAACAGATGTTCTAGCTTTTTTATCCTTGATGGGTGAGTTTTGCTTTAGCCCCTATAGGAAGAATGTTCGTCTTTGGAGTCCTAGTCTGTCCAAAGGCTTTTCCTA
CCACTTCTTTTGGTGCTTGGTTTCTCCTTCCATGTCGAGTGGTTCGATTTTCTCCTTTATGTGGAAGGTGAAAATTCCAAAGAAGGTTAAGTTCTTCATGAGGCAGGTGA
TGCATGGAAGAGTTAACACCTTGAATGGGATCTTGGGTAAAGTGTCCAATTTGGTAGGGCAACTTTATTGTATTCTTTGTAGGAGAGCGATAGAGGATCTCAATACTTTG
TGGAAATGTGACTTTGCCGGGGCAGCTTGGAGTTGTTTCTTTGAGATGTTTGACTTCCACTTTGTTGGTGAAAGTCCCAAAAAGGTACAATTTTTCATTTGGCAGGTTAT
CCATGGAAGAGTTAATACTCTTGATCGGCTTTCGAGAAAGATGCCCTCTGTGATTGGTCTGTTTTGTTGTATTCTCTGTTGGATGGCAAAGGAAGACCTTGACCACATTT
TATGGAGCTGTGATTTTGCTAGATTGGTTGGAATGAGTTCTTTGAGCTATGACTTGCAGTTTGCCAGGCATAAAAGCCTCAGGGAGATGATCGAGGAGTTCTGTTAG
mRNA sequenceShow/hide mRNA sequence
GAAACAACAGATGTTCTAGCTTTTTTATCCTTGATGGGTGAGTTTTGCTTTAGCCCCTATAGGAAGAATGTTCGTCTTTGGAGTCCTAGTCTGTCCAAAGGCTTTTCCTA
CCACTTCTTTTGGTGCTTGGTTTCTCCTTCCATGTCGAGTGGTTCGATTTTCTCCTTTATGTGGAAGGTGAAAATTCCAAAGAAGGTTAAGTTCTTCATGAGGCAGGTGA
TGCATGGAAGAGTTAACACCTTGAATGGGATCTTGGGTAAAGTGTCCAATTTGGTAGGGCAACTTTATTGTATTCTTTGTAGGAGAGCGATAGAGGATCTCAATACTTTG
TGGAAATGTGACTTTGCCGGGGCAGCTTGGAGTTGTTTCTTTGAGATGTTTGACTTCCACTTTGTTGGTGAAAGTCCCAAAAAGGTACAATTTTTCATTTGGCAGGTTAT
CCATGGAAGAGTTAATACTCTTGATCGGCTTTCGAGAAAGATGCCCTCTGTGATTGGTCTGTTTTGTTGTATTCTCTGTTGGATGGCAAAGGAAGACCTTGACCACATTT
TATGGAGCTGTGATTTTGCTAGATTGGTTGGAATGAGTTCTTTGAGCTATGACTTGCAGTTTGCCAGGCATAAAAGCCTCAGGGAGATGATCGAGGAGTTCTGTTAG
Protein sequenceShow/hide protein sequence
ETTDVLAFLSLMGEFCFSPYRKNVRLWSPSLSKGFSYHFFWCLVSPSMSSGSIFSFMWKVKIPKKVKFFMRQVMHGRVNTLNGILGKVSNLVGQLYCILCRRAIEDLNTL
WKCDFAGAAWSCFFEMFDFHFVGESPKKVQFFIWQVIHGRVNTLDRLSRKMPSVIGLFCCILCWMAKEDLDHILWSCDFARLVGMSSLSYDLQFARHKSLREMIEEFC