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Spg006611 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006611
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:47642937..47645086
RNA-Seq ExpressionSpg006611
SyntenySpg006611
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4360260.1 hypothetical protein F8388_020551 [Cannabis sativa]7.7e-1230.41Show/hide
Query:  TDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQ--DSPTVFIELDSVQVVNLLT
        T   E S+   W++PP G   +N DA+        G G+I R WDG ++ AG    +R   +   EA  ILE L N+P   DSP + I+ D   +V+ + 
Subjt:  TDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQ--DSPTVFIELDSVQVVNLLT

Query:  GKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA---WSNNQSETFKGPFPVWLLNMNNLDT
         ++  +T ++  I + +  +     +SI H  R +N  AH LA    +   ++ F  PFP WL      D+
Subjt:  GKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA---WSNNQSETFKGPFPVWLLNMNNLDT

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]6.3e-1442.86Show/hide
Query:  LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLK--NIPQDSPTVFIELDSVQVVNLLTGKEVDVT
        ++W  PP   WKLN+DASW EE+++GG+GWIL    G I+ AG   +  + +I  LE +TI+ GL+  N+   SP +++E DSV+V+ L+  ++VD+T
Subjt:  LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLK--NIPQDSPTVFIELDSVQVVNLLTGKEVDVT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]4.8e-1434.85Show/hide
Query:  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQD-SPTVFIELDSVQVVNLLTGKEVDVTEISL
        +W  P   +WKLN++A+W  +   GG+GWILR   G +I A  +++  +  I +LE + I EGL+ I Q+    + +E DS++ ++LL  +  D TEI  
Subjt:  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQD-SPTVFIELDSVQVVNLLTGKEVDVTEISL

Query:  FIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA
         ++E  Q+++  ++ S+ H +R  N +AH LA
Subjt:  FIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.1e-1534.83Show/hide
Query:  RFSTNHSGTDQTEASRL-------LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQDS--PT
        +F T  S   +T  S L       LKW  PP   W LN+DASW +    GG+GWI+R WDG I+ AG + V     +  LEA  ILEGL+N+        
Subjt:  RFSTNHSGTDQTEASRL-------LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQDS--PT

Query:  VFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLAWSNN---QSETFKGPFPVWL
        + IE DS +V +LL  K  D+T+    ++E   +    ++ +     R  N  AH LA   +   +S  +   FP WL
Subjt:  VFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLAWSNN---QSETFKGPFPVWL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.7e-1434.29Show/hide
Query:  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQD---------SPTVFIELDSVQVVNLLTGKE
        +W  P   +WKLN+DA+W  +   GG+GWILR   G +I A  +++  +  I +LE + I EGL+ I Q+            + +E DS++ ++LL  + 
Subjt:  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQD---------SPTVFIELDSVQVVNLLTGKE

Query:  VDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA
         D TEI   ++E  Q++   K+ S+ H +R  N +AH LA
Subjt:  VDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134122.3e-1434.85Show/hide
Query:  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQD-SPTVFIELDSVQVVNLLTGKEVDVTEISL
        +W  P   +WKLN++A+W  +   GG+GWILR   G +I A  +++  +  I +LE + I EGL+ I Q+    + +E DS++ ++LL  +  D TEI  
Subjt:  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQD-SPTVFIELDSVQVVNLLTGKEVDVTEISL

Query:  FIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA
         ++E  Q+++  ++ S+ H +R  N +AH LA
Subjt:  FIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA

A0A6J1CQG0 uncharacterized protein LOC1110132163.0e-1442.86Show/hide
Query:  LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLK--NIPQDSPTVFIELDSVQVVNLLTGKEVDVT
        ++W  PP   WKLN+DASW EE+++GG+GWIL    G I+ AG   +  + +I  LE +TI+ GL+  N+   SP +++E DSV+V+ L+  ++VD+T
Subjt:  LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLK--NIPQDSPTVFIELDSVQVVNLLTGKEVDVT

A0A6J1DNV9 uncharacterized protein LOC1110224035.5e-1634.83Show/hide
Query:  RFSTNHSGTDQTEASRL-------LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQDS--PT
        +F T  S   +T  S L       LKW  PP   W LN+DASW +    GG+GWI+R WDG I+ AG + V     +  LEA  ILEGL+N+        
Subjt:  RFSTNHSGTDQTEASRL-------LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQDS--PT

Query:  VFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLAWSNN---QSETFKGPFPVWL
        + IE DS +V +LL  K  D+T+    ++E   +    ++ +     R  N  AH LA   +   +S  +   FP WL
Subjt:  VFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLAWSNN---QSETFKGPFPVWL

A0A6J1DSV1 uncharacterized protein LOC1110236081.8e-1434.29Show/hide
Query:  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQD---------SPTVFIELDSVQVVNLLTGKE
        +W  P   +WKLN+DA+W  +   GG+GWILR   G +I A  +++  +  I +LE + I EGL+ I Q+            + +E DS++ ++LL  + 
Subjt:  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQD---------SPTVFIELDSVQVVNLLTGKE

Query:  VDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA
         D TEI   ++E  Q++   K+ S+ H +R  N +AH LA
Subjt:  VDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA

A0A7J6ERF5 Uncharacterized protein3.7e-1230.41Show/hide
Query:  TDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQ--DSPTVFIELDSVQVVNLLT
        T   E S+   W++PP G   +N DA+        G G+I R WDG ++ AG    +R   +   EA  ILE L N+P   DSP + I+ D   +V+ + 
Subjt:  TDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQ--DSPTVFIELDSVQVVNLLT

Query:  GKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA---WSNNQSETFKGPFPVWLLNMNNLDT
         ++  +T ++  I + +  +     +SI H  R +N  AH LA    +   ++ F  PFP WL      D+
Subjt:  GKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA---WSNNQSETFKGPFPVWLLNMNNLDT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0525.14Show/hide
Query:  TNRRFSTNHSGTDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQ-DSPTVFIEL
        T R      SG  Q E +  ++W  PP    K N+DA+W  E    G+GWILR   G ++  G + + R   +   E   +   +  + + +   +  E 
Subjt:  TNRRFSTNHSGTDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQ-DSPTVFIEL

Query:  DSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA-----WSNNQSETFKGPFPVWL
        D+  +VNLL   +   T +   +++ QQ++   +        R  N +A ++A     +SN   + F    P WL
Subjt:  DSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA-----WSNNQSETFKGPFPVWL

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-0435.48Show/hide
Query:  NRRFSTNHSGTDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAG
        N   +   +G    + SR  KW  P     K N DAS  E   + G+GWILR   G++I  G
Subjt:  NRRFSTNHSGTDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGACGAACCGGCGATTTTCTACGAACCACTCCGGCACAGATCAGACTGAGGCGAGTCGGTTGCTCAAATGGTTGAAGCCTCCGGAAGGCGCCTGGAAACTCAACAG
CGATGCCTCCTGGTGCGAAGAGAAGCAGATGGGCGGCGTCGGCTGGATCCTTAGACGTTGGGATGGGTCGATTATTGCAGCAGGCTTCCAGGTAGTACATCGACAATGGA
AGATTGGTTGGCTTGAAGCCCTAACTATTTTGGAAGGGCTGAAAAACATTCCCCAAGACTCCCCTACGGTGTTTATCGAGCTTGACTCAGTGCAGGTGGTAAACTTACTC
ACGGGGAAGGAGGTGGATGTCACAGAAATCTCGTTGTTCATTGATGAAGCTCAACAAATAATTCGCCTGAAGAAGATGCACTCGATCCATCACGCTGCAAGATGCCACAA
CCACATGGCCCATCAGCTGGCTTGGTCCAACAATCAGTCTGAAACTTTTAAGGGCCCATTTCCTGTATGGCTTTTAAATATGAACAATTTGGACACTGAGGGCATATCTA
TCAATATTGGGGGCGCCTGTCCCAGGGTTGGTTGCCACTCGGAAGCACCAGTTCTTGTAGAGTGGGCAGAAGCTCAGGCGCTTGTTGATGGAGTTTGTCTAGCTATGGAA
TCGAGTATATCACCAGTTTGGGCAGAAATTGATTCCAAAATTGTTTGGAATCTACTTCATGACCGCGACTATCACCTTAATGAGATTGCTCCCATTACTCAACAACTCAA
GTTGTGGGTCACAGATCGTCACATCAAGGGGTTCTTACTAACCCCGAGAGATGGCAACAAAGTCGCACACCAGCTAGCTACTCATGCACGCACAATGAAACACTCCGAAG
TTTGGTTGGAAGATTGTCCTCCTTGGGCCAACAACATCTTAGCTCATGAAATACCTCAATCTGATGTTCCAGACAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGACGAACCGGCGATTTTCTACGAACCACTCCGGCACAGATCAGACTGAGGCGAGTCGGTTGCTCAAATGGTTGAAGCCTCCGGAAGGCGCCTGGAAACTCAACAG
CGATGCCTCCTGGTGCGAAGAGAAGCAGATGGGCGGCGTCGGCTGGATCCTTAGACGTTGGGATGGGTCGATTATTGCAGCAGGCTTCCAGGTAGTACATCGACAATGGA
AGATTGGTTGGCTTGAAGCCCTAACTATTTTGGAAGGGCTGAAAAACATTCCCCAAGACTCCCCTACGGTGTTTATCGAGCTTGACTCAGTGCAGGTGGTAAACTTACTC
ACGGGGAAGGAGGTGGATGTCACAGAAATCTCGTTGTTCATTGATGAAGCTCAACAAATAATTCGCCTGAAGAAGATGCACTCGATCCATCACGCTGCAAGATGCCACAA
CCACATGGCCCATCAGCTGGCTTGGTCCAACAATCAGTCTGAAACTTTTAAGGGCCCATTTCCTGTATGGCTTTTAAATATGAACAATTTGGACACTGAGGGCATATCTA
TCAATATTGGGGGCGCCTGTCCCAGGGTTGGTTGCCACTCGGAAGCACCAGTTCTTGTAGAGTGGGCAGAAGCTCAGGCGCTTGTTGATGGAGTTTGTCTAGCTATGGAA
TCGAGTATATCACCAGTTTGGGCAGAAATTGATTCCAAAATTGTTTGGAATCTACTTCATGACCGCGACTATCACCTTAATGAGATTGCTCCCATTACTCAACAACTCAA
GTTGTGGGTCACAGATCGTCACATCAAGGGGTTCTTACTAACCCCGAGAGATGGCAACAAAGTCGCACACCAGCTAGCTACTCATGCACGCACAATGAAACACTCCGAAG
TTTGGTTGGAAGATTGTCCTCCTTGGGCCAACAACATCTTAGCTCATGAAATACCTCAATCTGATGTTCCAGACAGTTAG
Protein sequenceShow/hide protein sequence
MKTNRRFSTNHSGTDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQDSPTVFIELDSVQVVNLL
TGKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLAWSNNQSETFKGPFPVWLLNMNNLDTEGISINIGGACPRVGCHSEAPVLVEWAEAQALVDGVCLAME
SSISPVWAEIDSKIVWNLLHDRDYHLNEIAPITQQLKLWVTDRHIKGFLLTPRDGNKVAHQLATHARTMKHSEVWLEDCPPWANNILAHEIPQSDVPDS