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Spg006645 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006645
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:47434586..47436361
RNA-Seq ExpressionSpg006645
SyntenySpg006645
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]5.3e-1840.1Show/hide
Query:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTN-----MGWNTVFIFSGYIS---------------------------LLTLSVLRDNDAVVSAGRAPL
        V+K NQ LYL +   + R   L CLCSG FW N       +  +++    IS                           L TLSVL DNDAVVSAG+APL
Subjt:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTN-----MGWNTVFIFSGYIS---------------------------LLTLSVLRDNDAVVSAGRAPL

Query:  HRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EDDDVRWLHAIFRTK
         +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SS+  +   E   V +                        DDV WLHAIFR K
Subjt:  HRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EDDDVRWLHAIFRTK

Query:  LAGGLGG
         AGG GG
Subjt:  LAGGLGG

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1270.49Show/hide
Query:  GYISLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        GYISLLTLSVLRDN+ VV            SAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  GYISLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.2e-2551.19Show/hide
Query:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTNMGWNTVFIFSGYISLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSV
        V K NQ LYL   +G     N   L +G     + +          SL TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSV
Subjt:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTNMGWNTVFIFSGYISLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSV

Query:  ML----------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEDDDVRWLHAIFRTKLAGGLGG
        ML          VEIEL VPDTLPTSAESS S+S S         +  DDV WLH +FR K  GG GG
Subjt:  ML----------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEDDDVRWLHAIFRTKLAGGLGG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.2e-2551.19Show/hide
Query:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTNMGWNTVFIFSGYISLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSV
        V K NQ LYL   +G     N   L +G     + +          SL TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSV
Subjt:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTNMGWNTVFIFSGYISLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSV

Query:  ML----------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEDDDVRWLHAIFRTKLAGGLGG
        ML          VEIEL VPDTLPTSAESS S+S S         +  DDV WLH +FR K  GG GG
Subjt:  ML----------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEDDDVRWLHAIFRTKLAGGLGG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.3e-1840.1Show/hide
Query:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTN-----MGWNTVFIFSGYIS---------------------------LLTLSVLRDNDAVVSAGRAPL
        V+K NQ LYL +   + R   L CLCSG FW N       +  +++    IS                           L TLSVL DNDAVVSAG+APL
Subjt:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTN-----MGWNTVFIFSGYIS---------------------------LLTLSVLRDNDAVVSAGRAPL

Query:  HRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EDDDVRWLHAIFRTK
         +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SS+  +   E   V +                        DDV WLHAIFR K
Subjt:  HRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EDDDVRWLHAIFRTK

Query:  LAGGLGG
         AGG GG
Subjt:  LAGGLGG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.6e-1840.1Show/hide
Query:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTN-----MGWNTVFIFSGYIS---------------------------LLTLSVLRDNDAVVSAGRAPL
        V+K NQ LYL +   + R   L CLCSG FW N       +  +++    IS                           L TLSVL DNDAVVSAG+APL
Subjt:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTN-----MGWNTVFIFSGYIS---------------------------LLTLSVLRDNDAVVSAGRAPL

Query:  HRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EDDDVRWLHAIFRTK
         +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SS+  +   E   V +                        DDV WLHAIFR K
Subjt:  HRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EDDDVRWLHAIFRTK

Query:  LAGGLGG
         AGG GG
Subjt:  LAGGLGG

A0A5A7TCY8 DNA/RNA polymerases superfamily protein5.5e-1370.49Show/hide
Query:  GYISLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        GYISLLTLSVLRDN+ VV            SAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  GYISLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

A0A5A7VGQ5 Uncharacterized protein5.7e-2651.19Show/hide
Query:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTNMGWNTVFIFSGYISLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSV
        V K NQ LYL   +G     N   L +G     + +          SL TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSV
Subjt:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTNMGWNTVFIFSGYISLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSV

Query:  ML----------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEDDDVRWLHAIFRTKLAGGLGG
        ML          VEIEL VPDTLPTSAESS S+S S         +  DDV WLH +FR K  GG GG
Subjt:  ML----------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEDDDVRWLHAIFRTKLAGGLGG

A0A5D3BG85 Uncharacterized protein5.7e-2651.19Show/hide
Query:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTNMGWNTVFIFSGYISLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSV
        V K NQ LYL   +G     N   L +G     + +          SL TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSV
Subjt:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTNMGWNTVFIFSGYISLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSV

Query:  ML----------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEDDDVRWLHAIFRTKLAGGLGG
        ML          VEIEL VPDTLPTSAESS S+S S         +  DDV WLH +FR K  GG GG
Subjt:  ML----------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEDDDVRWLHAIFRTKLAGGLGG

A0A5D3BTP3 Reverse transcriptase2.6e-1840.1Show/hide
Query:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTN-----MGWNTVFIFSGYIS---------------------------LLTLSVLRDNDAVVSAGRAPL
        V+K NQ LYL +   + R   L CLCSG FW N       +  +++    IS                           L TLSVL DNDAVVSAG+APL
Subjt:  VYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTN-----MGWNTVFIFSGYIS---------------------------LLTLSVLRDNDAVVSAGRAPL

Query:  HRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EDDDVRWLHAIFRTK
         +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SS+  +   E   V +                        DDV WLHAIFR K
Subjt:  HRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVSL----------------------EDDDVRWLHAIFRTK

Query:  LAGGLGG
         AGG GG
Subjt:  LAGGLGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAA
GTTGAATCAGAATCTCTATTTGGAGAAAGACAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATATGGGTTGGAATACCGTTT
TCATTTTTTCAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGG
TTGTACTGGGCATGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAG
TTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGATGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAA
GTTGAATCAGAATCTCTATTTGGAGAAAGACAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATATGGGTTGGAATACCGTTT
TCATTTTTTCAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGG
TTGTACTGGGCATGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAG
TTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGATGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGG
Protein sequenceShow/hide protein sequence
MMRSLWFLKWKTEHRIFVQTRRISGVLWCFEHSGVYKLNQNLYLEKDKGQQRTSNLCCLCSGHFWTNMGWNTVFIFSGYISLLTLSVLRDNDAVVSAGRAPLHRRTSKRW
LYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEDDDVRWLHAIFRTKLAGGLGG