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Spg006660 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006660
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:47150240..47156533
RNA-Seq ExpressionSpg006660
SyntenySpg006660
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4362342.1 hypothetical protein F8388_008226 [Cannabis sativa]5.1e-0936.03Show/hide
Query:  VNNLDWAKSDHKPIELCLDG-VRIRHN-HGRMFRFEELWSKDEECLRIISRTGKWSE---PSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDK
        V N D+  SDH+P+   L+  VRI+ N   R FRFE  W KDEEC  I++ T  WSE   P  S+ ++     +C   L  W   K  +    +R+ + +
Subjt:  VNNLDWAKSDHKPIELCLDG-VRIRHN-HGRMFRFEELWSKDEECLRIISRTGKWSE---PSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDK

Query:  IKAVYDRPAP-IDFTVVHRLERQLDNLLLEEEIYWK
        +  +    AP +    V RLE  L++LL  EE YWK
Subjt:  IKAVYDRPAP-IDFTVVHRLERQLDNLLLEEEIYWK

PON95719.1 Endonuclease/exonuclease/phosphatase [Trema orientale]3.6e-1032.09Show/hide
Query:  VNNLDWAKSDHKPIELCLDG-VRIRHNHG-RMFRFEELWSKDEECLRIISRTGKWSEPSSSEPA--LHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKI
        +++L + KSDH+ + + L        N G   FRFE LW +DE+C  IIS    W  P+S      L  K   C ++L  W HRK   R   I++  + +
Subjt:  VNNLDWAKSDHKPIELCLDG-VRIRHNHG-RMFRFEELWSKDEECLRIISRTGKWSEPSSSEPA--LHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKI

Query:  KAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK
        + +Y +    D   + +L ++LD++LL++E YW+
Subjt:  KAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK

XP_030487341.1 uncharacterized protein LOC115704266 [Cannabis sativa]8.7e-0928.68Show/hide
Query:  VNNLDWAKSDHKPIELCLDGV----RIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALH--QKLQKCVNALKDWGHRKNRARWDNIRQVKD
        V+ L+W  SDH+P+ L    V        + G  F FE+ W+ +E+C RII     W +    +P L   + L  C + L  W  ++ +   D  +++K 
Subjt:  VNNLDWAKSDHKPIELCLDGV----RIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALH--QKLQKCVNALKDWGHRKNRARWDNIRQVKD

Query:  KIKAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK
        KI+++ +     D+    RLE  L+ +  ++E+YWK
Subjt:  KIKAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK

XP_035547413.1 uncharacterized protein LOC118348929 [Juglans regia]2.3e-0932.03Show/hide
Query:  LDWAKSDHKPIEL-CLDGVRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKIKAVYDR
        L W  SDH PI L C  G +    + R FR+E  W KDE+C ++I R  K+         +  KL  C  AL  W    +  R   I+++ DK+K + + 
Subjt:  LDWAKSDHKPIEL-CLDGVRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKIKAVYDR

Query:  PAPIDFTVVHRLERQLDNLLLEEEIYWK
          P   T +  +  +L  LL +E ++WK
Subjt:  PAPIDFTVVHRLERQLDNLLLEEEIYWK

XP_042952168.1 uncharacterized protein LOC122289255 [Carya illinoinensis]6.7e-0932.85Show/hide
Query:  NCIVNNLDWAKSDHKPIELCLDG-VRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPA---LHQKLQKCVNALKDWGHRKNRARWDNIRQVK
        N I   L   KSDH P+ L  +G + +R      FR+E  WS  EEC +II +   WS  +  E A   L  KL  C  AL+ W   + R     I+Q  
Subjt:  NCIVNNLDWAKSDHKPIELCLDG-VRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPA---LHQKLQKCVNALKDWGHRKNRARWDNIRQVK

Query:  DKIKAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK
        D+I  +           +  L+R+++  L EEE+ WK
Subjt:  DKIKAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK

TrEMBL top hitse value%identityAlignment
A0A2P5FD54 Endonuclease/exonuclease/phosphatase1.7e-1032.09Show/hide
Query:  VNNLDWAKSDHKPIELCLDG-VRIRHNHG-RMFRFEELWSKDEECLRIISRTGKWSEPSSSEPA--LHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKI
        +++L + KSDH+ + + L        N G   FRFE LW +DE+C  IIS    W  P+S      L  K   C ++L  W HRK   R   I++  + +
Subjt:  VNNLDWAKSDHKPIELCLDG-VRIRHNHG-RMFRFEELWSKDEECLRIISRTGKWSEPSSSEPA--LHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKI

Query:  KAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK
        + +Y +    D   + +L ++LD++LL++E YW+
Subjt:  KAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK

A0A6P9EU92 uncharacterized protein LOC1183489291.1e-0932.03Show/hide
Query:  LDWAKSDHKPIEL-CLDGVRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKIKAVYDR
        L W  SDH PI L C  G +    + R FR+E  W KDE+C ++I R  K+         +  KL  C  AL  W    +  R   I+++ DK+K + + 
Subjt:  LDWAKSDHKPIEL-CLDGVRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKIKAVYDR

Query:  PAPIDFTVVHRLERQLDNLLLEEEIYWK
          P   T +  +  +L  LL +E ++WK
Subjt:  PAPIDFTVVHRLERQLDNLLLEEEIYWK

A0A803PF28 Uncharacterized protein1.9e-0929.1Show/hide
Query:  VNNLDWAKSDHKPI----ELCLDGVRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKI
        V+ L+W  SDH+P+    ++   G   +   G  F FE+ W+++EEC +II       +     PAL + L  C + L  W   + +      R++K+KI
Subjt:  VNNLDWAKSDHKPI----ELCLDGVRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKI

Query:  KAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK
        + + D     D+   ++LE+ L+ +  + EIYWK
Subjt:  KAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK

A0A803PY54 Uncharacterized protein2.2e-1029.1Show/hide
Query:  VNNLDWAKSDHKPI----ELCLDGVRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKI
        V+ L+W  SDH+P+        +G       G  F FE+ W+ +E+C RII+ T   ++   S   LH+ LQ C + L  W  ++ +      + +K KI
Subjt:  VNNLDWAKSDHKPI----ELCLDGVRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALHQKLQKCVNALKDWGHRKNRARWDNIRQVKDKI

Query:  KAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK
        +++ +     D+    +LE  L+ +  ++EIYWK
Subjt:  KAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK

A0A803Q8X4 Uncharacterized protein3.5e-1130.07Show/hide
Query:  ENVYNCIVNNLDWAKSDHKPIELCLDGVRIRHNH----GRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPA--LHQKLQKCVNALKDWGHRKNRARWD
        E  + C V+ LDW  SDH+P+        + H      G  F FE+ W+ ++ECL II     WS   S +P   L+  L+ C + L+ W   +      
Subjt:  ENVYNCIVNNLDWAKSDHKPIELCLDGVRIRHNH----GRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPA--LHQKLQKCVNALKDWGHRKNRARWD

Query:  NIRQVKDKIKAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK
         ++++K+KI  +     P D+ V+ +LE  L+ +  + E+YWK
Subjt:  NIRQVKDKIKAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGTCGATTGGGAGATCAAGAACGATCAAGAACGAGAATCTTGGAGCATCGTGCTGTATTCTTCGAAAATCCAATAAATCGAGTCTTGTAAAGCCCGTGTCTAG
ATTAGGATTCGTTATGATAAAGATCGTGATGAATTCGGGCAAAAATTTGATCGAAATCGGTGCTGGAAACGAAGGTCAGTACGCTGTCCAGAGGCGTAGCGTCGCGACCC
TGCTCAACGGAGTCGCGACGTTGAAGAACAAGGGCTGGAAAAATCGGGGCAGCGTCGAGACGCTTTGTCTACAGCGTCTCGACGCTGACGGAAGTTTTCGAATATCCGGA
GCGTTGAACGCGTCAGCGGCCTCCCTTTGGAAAGTGTTTGCATGGGTCAATACCAAGGTGAATGGGGAGAATGTCTATAATTGCATTGTCAATAATCTCGACTGGGCTAA
GTCAGACCACAAGCCAATTGAATTGTGCTTGGATGGTGTCAGAATCAGACATAATCATGGGAGGATGTTTAGATTTGAGGAATTGTGGTCCAAGGATGAGGAATGCCTCC
GTATTATTTCTCGTACTGGGAAATGGTCAGAACCAAGCAGTAGTGAGCCAGCTCTCCATCAGAAACTTCAAAAGTGTGTGAATGCCCTAAAAGATTGGGGTCATAGAAAG
AACAGAGCTAGATGGGATAATATTCGGCAGGTTAAGGACAAGATTAAAGCAGTTTATGATCGACCTGCTCCTATTGATTTTACTGTTGTGCATCGGCTTGAGCGGCAACT
GGATAATTTATTACTGGAGGAGGAAATATATTGGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGTCGATTGGGAGATCAAGAACGATCAAGAACGAGAATCTTGGAGCATCGTGCTGTATTCTTCGAAAATCCAATAAATCGAGTCTTGTAAAGCCCGTGTCTAG
ATTAGGATTCGTTATGATAAAGATCGTGATGAATTCGGGCAAAAATTTGATCGAAATCGGTGCTGGAAACGAAGGTCAGTACGCTGTCCAGAGGCGTAGCGTCGCGACCC
TGCTCAACGGAGTCGCGACGTTGAAGAACAAGGGCTGGAAAAATCGGGGCAGCGTCGAGACGCTTTGTCTACAGCGTCTCGACGCTGACGGAAGTTTTCGAATATCCGGA
GCGTTGAACGCGTCAGCGGCCTCCCTTTGGAAAGTGTTTGCATGGGTCAATACCAAGGTGAATGGGGAGAATGTCTATAATTGCATTGTCAATAATCTCGACTGGGCTAA
GTCAGACCACAAGCCAATTGAATTGTGCTTGGATGGTGTCAGAATCAGACATAATCATGGGAGGATGTTTAGATTTGAGGAATTGTGGTCCAAGGATGAGGAATGCCTCC
GTATTATTTCTCGTACTGGGAAATGGTCAGAACCAAGCAGTAGTGAGCCAGCTCTCCATCAGAAACTTCAAAAGTGTGTGAATGCCCTAAAAGATTGGGGTCATAGAAAG
AACAGAGCTAGATGGGATAATATTCGGCAGGTTAAGGACAAGATTAAAGCAGTTTATGATCGACCTGCTCCTATTGATTTTACTGTTGTGCATCGGCTTGAGCGGCAACT
GGATAATTTATTACTGGAGGAGGAAATATATTGGAAATAG
Protein sequenceShow/hide protein sequence
MVVSIGRSRTIKNENLGASCCILRKSNKSSLVKPVSRLGFVMIKIVMNSGKNLIEIGAGNEGQYAVQRRSVATLLNGVATLKNKGWKNRGSVETLCLQRLDADGSFRISG
ALNASAASLWKVFAWVNTKVNGENVYNCIVNNLDWAKSDHKPIELCLDGVRIRHNHGRMFRFEELWSKDEECLRIISRTGKWSEPSSSEPALHQKLQKCVNALKDWGHRK
NRARWDNIRQVKDKIKAVYDRPAPIDFTVVHRLERQLDNLLLEEEIYWK