; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006679 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006679
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationscaffold1:56843127..56846272
RNA-Seq ExpressionSpg006679
SyntenySpg006679
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR002171 - Ribosomal protein L2
IPR008991 - Translation protein SH3-like domain superfamily
IPR012337 - Ribonuclease H-like superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR022669 - Ribosomal protein L2, C-terminal
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFU96015.1 Rpl2, partial [Anthodiscus peruanus]2.2e-2679.12Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWLETTHKRR
        L T +HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL   H  R
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWLETTHKRR

AXU40408.1 ribosomal protein L2 [Gomphogyne cissiformis var. villosa]3.8e-2683.33Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T +HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

KAG6607616.1 hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sororia]2.5e-3057.36Show/hide
Query:  LSVQLSENQLSYMIYCLRKQYLEREDEKGLDSHGLRVLELSRKIWGVDSNEGWPKTKVLR-EHYEKYLRIYVVEELGFSVDCLTASVFEEIKKDWQEFRF
        LSV + +NQL YMIYCLRKQYL  E+EK  D   L+V+ELS K+W VD+     KTKV+  ++Y ++L++YVV+ LG   DCLT+ V E+IK+DW+EFR 
Subjt:  LSVQLSENQLSYMIYCLRKQYLEREDEKGLDSHGLRVLELSRKIWGVDSNEGWPKTKVLR-EHYEKYLRIYVVEELGFSVDCLTASVFEEIKKDWQEFRF

Query:  VQDEFRMMQRRFSLQLCELKTNMHNTQLQ
        V+DEFR +Q RF+LQLCEL  +MHNTQL+
Subjt:  VQDEFRMMQRRFSLQLCELKTNMHNTQLQ

YP_009028343.1 ribosomal protein L2 [Licania sprucei]2.9e-2683.33Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T++HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

YP_010006497.1 ribosomal protein L2 [Mitostemma brevifilis]2.9e-2683.33Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T++HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

TrEMBL top hitse value%identityAlignment
A0A023T196 50S ribosomal protein L2, chloroplastic1.4e-2683.33Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T++HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

A0A346TM17 50S ribosomal protein L2, chloroplastic1.8e-2683.33Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T +HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

A0A6H1YDZ9 50S ribosomal protein L2, chloroplastic1.8e-2678.89Show/hide
Query:  SLQLCELKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        +L L  L T +HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGR GSKCWL
Subjt:  SLQLCELKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

A0A7H0TVX0 50S ribosomal protein L2, chloroplastic1.4e-2683.33Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T++HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

K4KCP5 Rpl2 (Fragment)1.1e-2679.12Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWLETTHKRR
        L T +HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL   H  R
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWLETTHKRR

SwissProt top hitse value%identityAlignment
A4GYV2 50S ribosomal protein L2, chloroplastic1.9e-2882.14Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T +HN ++ LG      +GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

A4QK59 50S ribosomal protein L2, chloroplastic2.5e-2882.14Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T +HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

Q14F95 50S ribosomal protein L2-A, chloroplastic1.9e-2882.14Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T +HN ++ LG      +GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

Q14FB6 50S ribosomal protein L2-B, chloroplastic1.9e-2882.14Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T +HN ++ LG      +GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

Q4VZK5 50S ribosomal protein L2, chloroplastic8.4e-2983.33Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T +HN ++ LG      KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

Arabidopsis top hitse value%identityAlignment
AT1G04625.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-0527.43Show/hide
Query:  GVLIIGEGYTIYGAMDMIENMDLNPLAAEIRAILHAIRLLHRLQIREVHMCSDSINAIGMINKDLEMTTYVANWIVNIQEMRKEFQDISFHYVPRERNLK
        G L+  +  T  GA   I ++  NP+ +E++A++ A++       R+++   D+     ++N        V NWI +I   R +F++  F +  R  N+ 
Subjt:  GVLIIGEGYTIYGAMDMIENMDLNPLAAEIRAILHAIRLLHRLQIREVHMCSDSINAIGMINKDLEMTTYVANWIVNIQEMRKEFQDISFHYVPRERNLK

Query:  ANALAKHALANNS
        A+ALAK  L  N+
Subjt:  ANALAKHALANNS

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-0531.82Show/hide
Query:  VQVYTDAVVKPNHIGAGFGVLIIG-EGYTIYGAMDMIENMDLNPLAAEIRAILHAIRLLHRLQIREVHMCSDSINAIGMINKDLEMTTYVANWIVNIQEM
        V ++TDA  K      GFG +I      T         N+ L PL AE  A+  A++    + I ++ M SDS   I  I  +   T +    I +I  +
Subjt:  VQVYTDAVVKPNHIGAGFGVLIIG-EGYTIYGAMDMIENMDLNPLAAEIRAILHAIRLLHRLQIREVHMCSDSINAIGMINKDLEMTTYVANWIVNIQEM

Query:  RKEFQDISFHYVPRERNLKANALAKHALANNS
           F D+SF +VPR  N  A+ LAK +L + S
Subjt:  RKEFQDISFHYVPRERNLKANALAKHALANNS

AT4G29090.1 Ribonuclease H-like superfamily protein9.6e-0431.73Show/hide
Query:  LAAEIRAILHAIRLLHRLQIREVHMCSDSINAIGMINKDLEMTTYVANWIVNIQEMRKEFQDISFHYVPRERNLKANALAKHALA--NNSTMLWLSDFPT
        L AE+ A+  A+  L R Q   V   SDS   I ++N D E+   +   I ++Q +  +F ++ F ++PRE N  A  +A+ +L+  N    L+ S  P+
Subjt:  LAAEIRAILHAIRLLHRLQIREVHMCSDSINAIGMINKDLEMTTYVANWIVNIQEMRKEFQDISFHYVPRERNLKANALAKHALA--NNSTMLWLSDFPT

Query:  WLLS
        W  S
Subjt:  WLLS

ATCG00830.1 ribosomal protein L23.9e-2980.95Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T +HN ++ LG      +GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL

ATCG01310.1 ribosomal protein L23.9e-2980.95Show/hide
Query:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL
        L T +HN ++ LG      +GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGR GSKCWL
Subjt:  LKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAGTGTTCAACTCTCCGAGAATCAATTGTCTTACATGATATATTGTTTAAGAAAACAATATCTAGAACGTGAAGATGAAAAGGGTTTGGATTCTCATGGCCTCAG
AGTTTTGGAATTATCGAGGAAAATATGGGGAGTTGATAGCAATGAGGGGTGGCCAAAGACAAAAGTACTAAGAGAACATTATGAGAAATATTTACGAATTTATGTTGTTG
AAGAATTAGGATTTTCGGTGGATTGCTTGACTGCTTCTGTTTTTGAGGAAATTAAGAAAGACTGGCAAGAGTTTCGATTTGTTCAAGATGAGTTTCGGATGATGCAACGC
AGATTTTCTTTGCAGCTTTGTGAATTGAAGACCAACATGCATAATACACAACTTCAACTTGGACACACGTTTAGAAGAAAAAAAGGGGGACAATTAGCTAGAGCAGCTGG
TGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGG
GGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGTCGGATCTAAGTGTTGGCTAGAAACAACTCATAAGAGAAGAGCAAGAGATGGTTCTGATCCAAATCCCAATGAG
CAAACCATCATGTCAACTCCCAATTTTGTTCAAGTGTATACAGATGCAGTGGTGAAGCCCAATCATATAGGTGCGGGTTTTGGTGTGCTTATAATTGGGGAAGGTTATAC
CATATATGGCGCAATGGATATGATTGAAAACATGGATTTAAATCCGTTGGCAGCCGAGATTCGGGCAATTCTCCACGCTATTCGTCTCCTCCATCGATTACAAATCCGAG
AGGTTCATATGTGTTCTGACTCTATCAATGCCATTGGAATGATCAATAAGGATTTGGAAATGACAACATATGTGGCTAATTGGATAGTCAATATCCAAGAGATGCGTAAG
GAATTCCAGGATATTTCTTTCCATTATGTTCCTAGAGAAAGAAATTTAAAGGCCAATGCTTTGGCCAAACATGCTTTGGCTAATAATAGTACCATGTTGTGGTTATCAGA
TTTCCCTACATGGCTGTTGTCTATG
mRNA sequenceShow/hide mRNA sequence
ATGCTAAGTGTTCAACTCTCCGAGAATCAATTGTCTTACATGATATATTGTTTAAGAAAACAATATCTAGAACGTGAAGATGAAAAGGGTTTGGATTCTCATGGCCTCAG
AGTTTTGGAATTATCGAGGAAAATATGGGGAGTTGATAGCAATGAGGGGTGGCCAAAGACAAAAGTACTAAGAGAACATTATGAGAAATATTTACGAATTTATGTTGTTG
AAGAATTAGGATTTTCGGTGGATTGCTTGACTGCTTCTGTTTTTGAGGAAATTAAGAAAGACTGGCAAGAGTTTCGATTTGTTCAAGATGAGTTTCGGATGATGCAACGC
AGATTTTCTTTGCAGCTTTGTGAATTGAAGACCAACATGCATAATACACAACTTCAACTTGGACACACGTTTAGAAGAAAAAAAGGGGGACAATTAGCTAGAGCAGCTGG
TGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGG
GGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGTCGGATCTAAGTGTTGGCTAGAAACAACTCATAAGAGAAGAGCAAGAGATGGTTCTGATCCAAATCCCAATGAG
CAAACCATCATGTCAACTCCCAATTTTGTTCAAGTGTATACAGATGCAGTGGTGAAGCCCAATCATATAGGTGCGGGTTTTGGTGTGCTTATAATTGGGGAAGGTTATAC
CATATATGGCGCAATGGATATGATTGAAAACATGGATTTAAATCCGTTGGCAGCCGAGATTCGGGCAATTCTCCACGCTATTCGTCTCCTCCATCGATTACAAATCCGAG
AGGTTCATATGTGTTCTGACTCTATCAATGCCATTGGAATGATCAATAAGGATTTGGAAATGACAACATATGTGGCTAATTGGATAGTCAATATCCAAGAGATGCGTAAG
GAATTCCAGGATATTTCTTTCCATTATGTTCCTAGAGAAAGAAATTTAAAGGCCAATGCTTTGGCCAAACATGCTTTGGCTAATAATAGTACCATGTTGTGGTTATCAGA
TTTCCCTACATGGCTGTTGTCTATG
Protein sequenceShow/hide protein sequence
MLSVQLSENQLSYMIYCLRKQYLEREDEKGLDSHGLRVLELSRKIWGVDSNEGWPKTKVLREHYEKYLRIYVVEELGFSVDCLTASVFEEIKKDWQEFRFVQDEFRMMQR
RFSLQLCELKTNMHNTQLQLGHTFRRKKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWLETTHKRRARDGSDPNPNE
QTIMSTPNFVQVYTDAVVKPNHIGAGFGVLIIGEGYTIYGAMDMIENMDLNPLAAEIRAILHAIRLLHRLQIREVHMCSDSINAIGMINKDLEMTTYVANWIVNIQEMRK
EFQDISFHYVPRERNLKANALAKHALANNSTMLWLSDFPTWLLSM