; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006680 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006680
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold1:55486596..55490354
RNA-Seq ExpressionSpg006680
SyntenySpg006680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051515.1 hypothetical protein E6C27_scaffold174G00380 [Cucumis melo var. makuwa]4.6e-3154.84Show/hide
Query:  NEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKL
        N H   S+EVDNS + +Q+ SVFDRIKP TTR SVFQR+SMA  EEENQC   T+TR+S F+RLS+S LKK++ STS FDRLK+T+DQ +R+M +L+ K 
Subjt:  NEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKL

Query:  FDEVNSDKKLQSSIPSRTKRKFSVLINTEGSLK-----------FAFFMLQVRCF
        F E N D K+ S +PSR KRK SV INT+G                F MLQ R F
Subjt:  FDEVNSDKKLQSSIPSRTKRKFSVLINTEGSLK-----------FAFFMLQVRCF

KAA0059024.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.6e-3059.26Show/hide
Query:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE
        +++N +   SKEV+NS K  Q+TS+FDRIKP TTR SVFQR+SMA  EEENQC    +TR+STF+RLS+S  KK + STS FDRLK+T+DQ +R+M +L+
Subjt:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE

Query:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL
         K F E N   K+ S +PSR KRK SV INTEGSL
Subjt:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-3052.83Show/hide
Query:  MQEHINTLMKAIEEKDSQIAQLKSQIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQ
        +++H   +++      + IA++ +  ++      KEVDNS + +Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC  ST+ R+STF+RLS+S  KK +
Subjt:  MQEHINTLMKAIEEKDSQIAQLKSQIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQ

Query:  HSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL
         STS FDRLK+T+DQ +R+M  L+ K F E N D K+ S +PSR KRK SV INTEGSL
Subjt:  HSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.6e-3059.26Show/hide
Query:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE
        +++N +   SKEV+NS +  Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC    +TR+STF+RLS+S  KK + STS FDRLK+T+DQ +R+M + +
Subjt:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE

Query:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL
         K F E N D K+ S +PSR KRK SV INTEGSL
Subjt:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL

TYK14888.1 gag protease polyprotein [Cucumis melo var. makuwa]8.6e-3059.26Show/hide
Query:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE
        +++N +   SKEV+NS +  Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC    +TR+STF+RLS+S  KK + STS FDRLK+T+DQ +R+M + +
Subjt:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE

Query:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL
         K F E N D K+ S +PSR KRK SV INTEGSL
Subjt:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7VDY3 Ty3-gypsy retrotransposon protein1.4e-3052.83Show/hide
Query:  MQEHINTLMKAIEEKDSQIAQLKSQIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQ
        +++H   +++      + IA++ +  ++      KEVDNS + +Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC  ST+ R+STF+RLS+S  KK +
Subjt:  MQEHINTLMKAIEEKDSQIAQLKSQIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQ

Query:  HSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL
         STS FDRLK+T+DQ +R+M  L+ K F E N D K+ S +PSR KRK SV INTEGSL
Subjt:  HSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL

A0A5D3CA53 Retrotransposon gag protein4.2e-3062.4Show/hide
Query:  KEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        +EVDNS + +Q+T VFDRIKP TTR SVFQR+SMA  EEE QC  ST+TR+STF+RLS+S  KK + STS FDRLK+T+DQ +++M +L+ K F E N D
Subjt:  KEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRTKRKFSVLINTEGSL
         K+ S +PSR KRK SV INTEGSL
Subjt:  KKLQSSIPSRTKRKFSVLINTEGSL

A0A5D3CD55 Ty3-gypsy retrotransposon protein4.2e-3059.26Show/hide
Query:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE
        +++N +   SKEV+NS +  Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC    +TR+STF+RLS+S  KK + STS FDRLK+T+DQ +R+M + +
Subjt:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE

Query:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL
         K F E N D K+ S +PSR KRK SV INTEGSL
Subjt:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL

A0A5D3CUI5 Gag protease polyprotein4.2e-3059.26Show/hide
Query:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE
        +++N +   SKEV+NS +  Q+TSVFDRIKP TTR SVFQR+SMA  EEENQC    +TR+STF+RLS+S  KK + STS FDRLK+T+DQ +R+M + +
Subjt:  QIENEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLE

Query:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL
         K F E N D K+ S +PSR KRK SV INTEGSL
Subjt:  VKLFDEVNSDKKLQSSIPSRTKRKFSVLINTEGSL

A0A5D3DKF5 Uncharacterized protein2.2e-3154.84Show/hide
Query:  NEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKL
        N H   S+EVDNS + +Q+ SVFDRIKP TTR SVFQR+SMA  EEENQC   T+TR+S F+RLS+S LKK++ STS FDRLK+T+DQ +R+M +L+ K 
Subjt:  NEHIAESKEVDNSEKGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKL

Query:  FDEVNSDKKLQSSIPSRTKRKFSVLINTEGSLK-----------FAFFMLQVRCF
        F E N D K+ S +PSR KRK SV INT+G                F MLQ R F
Subjt:  FDEVNSDKKLQSSIPSRTKRKFSVLINTEGSLK-----------FAFFMLQVRCF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTGTACTGCTCGTTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACGAACATATCGCTGAATCAAAAGAAGTTGACAATTCTGAG
AAGGGTGAACAAAAGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTC
GGTGTCCACCTTCACTCGATCTTCAACTTTCCAAAGGCTAAGTGTCTCCAAATTGAAGAAAAGTCAACATTCGACATCTGTTTTTGATCGCCTTAAAGTAACAAGCGATC
AACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAATAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTACGAAGAGGAAGTTCTCTGTT
CTCATAAATACAGAAGGTTCCTTGAAGTTTGCATTCTTCATGCTTCAAGTTCGGTGTTTCGCTCCTTCAAAGTTCGACGTCTCACCTTCTCCACGTTCGGCGATTGCTCC
ATTCAAGTTTGGCTTATCACTTGTCCCAAGTTCGATACCTCGCTTCACCTTCAAAGGGTGGCAGTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTGGTG
AAGTCACTGCAATTGAATCTGATGACGACGTTGTAGGCGAGTCTGGTGATCACCCATGTGATGAAGTCCCTACAAGTGAATATGATGACGACCGTTGTAGGCGAGTCGAG
TCTGGTGACCGTCTACAGGCTACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTGTACTGCTCGTTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACGAACATATCGCTGAATCAAAAGAAGTTGACAATTCTGAG
AAGGGTGAACAAAAGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTC
GGTGTCCACCTTCACTCGATCTTCAACTTTCCAAAGGCTAAGTGTCTCCAAATTGAAGAAAAGTCAACATTCGACATCTGTTTTTGATCGCCTTAAAGTAACAAGCGATC
AACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAATAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTACGAAGAGGAAGTTCTCTGTT
CTCATAAATACAGAAGGTTCCTTGAAGTTTGCATTCTTCATGCTTCAAGTTCGGTGTTTCGCTCCTTCAAAGTTCGACGTCTCACCTTCTCCACGTTCGGCGATTGCTCC
ATTCAAGTTTGGCTTATCACTTGTCCCAAGTTCGATACCTCGCTTCACCTTCAAAGGGTGGCAGTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTGGTG
AAGTCACTGCAATTGAATCTGATGACGACGTTGTAGGCGAGTCTGGTGATCACCCATGTGATGAAGTCCCTACAAGTGAATATGATGACGACCGTTGTAGGCGAGTCGAG
TCTGGTGACCGTCTACAGGCTACTTAG
Protein sequenceShow/hide protein sequence
MSCTARCCFNELTLQEDKASIVAGQETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETKTMEERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENEHIAESKEVDNSE
KGEQKTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTFTRSSTFQRLSVSKLKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRTKRKFSV
LINTEGSLKFAFFMLQVRCFAPSKFDVSPSPRSAIAPFKFGLSLVPSSIPRFTFKGWQLKASFSLHLQIFKGGEVTAIESDDDVVGESGDHPCDEVPTSEYDDDRCRRVE
SGDRLQAT