; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006694 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006694
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold1:55410450..55422866
RNA-Seq ExpressionSpg006694
SyntenySpg006694
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.6e-0465.79Show/hide
Query:  GESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        GES    DSI L F GQDR+GSWEH+ TRWN LLP  R
Subjt:  GESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]5.3e-0570.27Show/hide
Query:  ESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        ES   ADS+ L FWGQDRV SWEH+ TRWNSLLP  R
Subjt:  ESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-0568.42Show/hide
Query:  GESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        GES    DSI L FWGQDRVGSWEH+ TRWNS +P  R
Subjt:  GESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein6.3e-0458.97Show/hide
Query:  SDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIRVSR
        SD     + L  WGQD+VGSWEH+  RWNSL+PD R SR
Subjt:  SDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIRVSR
A0A5A7SPG1 Pol protein1.3e-0465.79Show/hide
Query:  GESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        GES    DSI L F GQDR+GSWEH+ TRWN LLP  R
Subjt:  GESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
A0A5A7U2P4 Integrase catalytic domain-containing protein2.5e-0570.27Show/hide
Query:  ESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        ES   ADS+ L FWGQDRV SWEH+ TRWNSLLP  R
Subjt:  ESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
A0A5D3C3J6 Gag/pol protein5.1e-0668.42Show/hide
Query:  GESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        GES    DSI L FWGQDRVGSWEH+ TRWNS +P  R
Subjt:  GESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
A0A5D3E3M6 Uncharacterized protein6.3e-0458.97Show/hide
Query:  SDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIRVSR
        SD     + L  WGQD+VGSWEH+  RWNSL+PD R SR
Subjt:  SDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIRVSR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGACAGCGCAATACCAGCCTAATGAGACAGTTAGGAAACGAAACCCGGAGGAAAAACAGGCCAAAGGGTCGGGCCAAGGCCAAAGGGATCGGGCTTTTGGCCTGAC
CCCCTGCTCGGCCTCGGTCAGACCTGTTGGGTTTTATGTCCTAAAACTCGTAGATAGGACATACGGGGATCAATGTTCAAGTTTTAGCCTAAAGGGTCTGCAGTATAGGG
ATAAGGCCGGGTACCTTATCCTGGTGACACTATGGATACGACATGCTTTGTATATTGATACAAACGATGACCAAGGCAACTTGGCCTTAATCCTGAGTGGATTATGGACT
CCTGTCCATGAGGGATTGTCCTTTGACTTGGGTGAGAGTGACCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTTGGGAGCTGGGAACATAGTCT
TACAAGATGGAATTCACTCCTTCCCGATATTAGGGTGAGTAGAGGTCCATTAGGTCTCACCGGTAGCTCCATTGGGGCATTGAGGAGAATACCAGTGATTCTACGTGGTG
GTGTTCGTGAGCGGCTTGCAGCATCAAAAGGAAAAATTCTTGCTGCTGGAATTTTTGGATTCAACGAGAATTTGTTGGCGAAACGATCGAGAACGACTACTAAAATTAAA
TCAGGGTTAAAGGTTCTGTACGTTTCCGCTGCGCAAGGGCTATTATCCCTTCAAGGCCCACTTGCGCTGGTCGAGCTCTTCCGCCTCCGTTTGGTCCCCGATGCTCCTAG
ACGTCCCGTTTCCACTTGGTTCAGCCCGAATCGCCTCCGAATGCCTAAAAACCTAGAGTCACGTCTTCCCCCATCTCAAACAAATTTACCGTTGGTGGCACATGAAAGTC
GGGGGATGGAGAAGAGAAACCAGGACATGAATACAGAGTATTCGAACGGTGACCGCCACCAACGGAGGTCACGAGAAGAAGTCCGAGATCGACCTCGGACCGAATCTCCT
CATCCTCGGTCTCCACTACCCTCATCCGGAGAGAAGCAAACCGATCTCAAAATTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGATACTTCG
TATCTTGGATAAACTTGGTCCTAGTACTAAAACCCATGATGAGAGGTTTATTAGGGATCCGAGGAAGGGGAGGGAGCCAATGGAGTACACTGCAGAATCAGAGACGAGAT
TGAAGGGAAAGAAGAATGACAACATGACCAGCAAGATCAGGGGGCTCAAACCTACAGATCGTACAATTCTGAGGAGCCCAGATCATTCCAAGACAGACCTAAGGGATCTG
ATCGAGGAGAAGCGCAAAAGTGCCAAGGCTGTCGAGGCCGAGGCCAGAGTTGCCGAAGCTGAAGCTAGGGTTGCCGAGGTTGAGGCCAAGAAGGAAAACCACCCTTGGAA
GACTAAGTTTCTAAACACGATAAAGGAGCTTGAAAATCCTCAGGAAGATCTGCAGAAGTCGAAGGGCCCTACCCTCTCAATGGCACGAGAGGGTTTTCTGTTTGATGGTT
GGACCACAAACAGATCCGTGGACACAGAAAATATGTCTGCAATGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGACAGCGCAATACCAGCCTAATGAGACAGTTAGGAAACGAAACCCGGAGGAAAAACAGGCCAAAGGGTCGGGCCAAGGCCAAAGGGATCGGGCTTTTGGCCTGAC
CCCCTGCTCGGCCTCGGTCAGACCTGTTGGGTTTTATGTCCTAAAACTCGTAGATAGGACATACGGGGATCAATGTTCAAGTTTTAGCCTAAAGGGTCTGCAGTATAGGG
ATAAGGCCGGGTACCTTATCCTGGTGACACTATGGATACGACATGCTTTGTATATTGATACAAACGATGACCAAGGCAACTTGGCCTTAATCCTGAGTGGATTATGGACT
CCTGTCCATGAGGGATTGTCCTTTGACTTGGGTGAGAGTGACCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTTGGGAGCTGGGAACATAGTCT
TACAAGATGGAATTCACTCCTTCCCGATATTAGGGTGAGTAGAGGTCCATTAGGTCTCACCGGTAGCTCCATTGGGGCATTGAGGAGAATACCAGTGATTCTACGTGGTG
GTGTTCGTGAGCGGCTTGCAGCATCAAAAGGAAAAATTCTTGCTGCTGGAATTTTTGGATTCAACGAGAATTTGTTGGCGAAACGATCGAGAACGACTACTAAAATTAAA
TCAGGGTTAAAGGTTCTGTACGTTTCCGCTGCGCAAGGGCTATTATCCCTTCAAGGCCCACTTGCGCTGGTCGAGCTCTTCCGCCTCCGTTTGGTCCCCGATGCTCCTAG
ACGTCCCGTTTCCACTTGGTTCAGCCCGAATCGCCTCCGAATGCCTAAAAACCTAGAGTCACGTCTTCCCCCATCTCAAACAAATTTACCGTTGGTGGCACATGAAAGTC
GGGGGATGGAGAAGAGAAACCAGGACATGAATACAGAGTATTCGAACGGTGACCGCCACCAACGGAGGTCACGAGAAGAAGTCCGAGATCGACCTCGGACCGAATCTCCT
CATCCTCGGTCTCCACTACCCTCATCCGGAGAGAAGCAAACCGATCTCAAAATTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGATACTTCG
TATCTTGGATAAACTTGGTCCTAGTACTAAAACCCATGATGAGAGGTTTATTAGGGATCCGAGGAAGGGGAGGGAGCCAATGGAGTACACTGCAGAATCAGAGACGAGAT
TGAAGGGAAAGAAGAATGACAACATGACCAGCAAGATCAGGGGGCTCAAACCTACAGATCGTACAATTCTGAGGAGCCCAGATCATTCCAAGACAGACCTAAGGGATCTG
ATCGAGGAGAAGCGCAAAAGTGCCAAGGCTGTCGAGGCCGAGGCCAGAGTTGCCGAAGCTGAAGCTAGGGTTGCCGAGGTTGAGGCCAAGAAGGAAAACCACCCTTGGAA
GACTAAGTTTCTAAACACGATAAAGGAGCTTGAAAATCCTCAGGAAGATCTGCAGAAGTCGAAGGGCCCTACCCTCTCAATGGCACGAGAGGGTTTTCTGTTTGATGGTT
GGACCACAAACAGATCCGTGGACACAGAAAATATGTCTGCAATGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGA
Protein sequenceShow/hide protein sequence
MRTAQYQPNETVRKRNPEEKQAKGSGQGQRDRAFGLTPCSASVRPVGFYVLKLVDRTYGDQCSSFSLKGLQYRDKAGYLILVTLWIRHALYIDTNDDQGNLALILSGLWT
PVHEGLSFDLGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIRVSRGPLGLTGSSIGALRRIPVILRGGVRERLAASKGKILAAGIFGFNENLLAKRSRTTTKIK
SGLKVLYVSAAQGLLSLQGPLALVELFRLRLVPDAPRRPVSTWFSPNRLRMPKNLESRLPPSQTNLPLVAHESRGMEKRNQDMNTEYSNGDRHQRRSREEVRDRPRTESP
HPRSPLPSSGEKQTDLKIAALENKVSAMDHNLSRILRILDKLGPSTKTHDERFIRDPRKGREPMEYTAESETRLKGKKNDNMTSKIRGLKPTDRTILRSPDHSKTDLRDL
IEEKRKSAKAVEAEARVAEAEARVAEVEAKKENHPWKTKFLNTIKELENPQEDLQKSKGPTLSMAREGFLFDGWTTNRSVDTENMSAMRRVQLSIRSH