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Spg006698 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006698
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:54612515..54615110
RNA-Seq ExpressionSpg006698
SyntenySpg006698
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067802.1 uncharacterized protein E6C27_scaffold2484G00050 [Cucumis melo var. makuwa]9.5e-0460.47Show/hide
Query:  FGSTFQEGQWVSLEEGDVRWLHAIFRTKLAGGPEGGVTTWYQS
        FGS  +  + V     DV WLHA+FR K AGGP GGVTTWYQS
Subjt:  FGSTFQEGQWVSLEEGDVRWLHAIFRTKLAGGPEGGVTTWYQS
TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.0e-0444.78Show/hide
Query:  WFSLVFRA-----FWGVQVESEALFGSTFQEGQWVSLEEGDVRWLHAIFRTKLAGGPEGGVTTWYQS
        W  L F +     F+ V ++++   G       W+ +   DV WLHAIFR K AGGP GGVTTWYQS
Subjt:  WFSLVFRA-----FWGVQVESEALFGSTFQEGQWVSLEEGDVRWLHAIFRTKLAGGPEGGVTTWYQS
A0A5A7VHF1 CCHC-type domain-containing protein4.6e-0460.47Show/hide
Query:  FGSTFQEGQWVSLEEGDVRWLHAIFRTKLAGGPEGGVTTWYQS
        FGS  +  + V     DV WLHA+FR K AGGP GGVTTWYQS
Subjt:  FGSTFQEGQWVSLEEGDVRWLHAIFRTKLAGGPEGGVTTWYQS
A0A5D3BTP3 Reverse transcriptase6.0e-0444.78Show/hide
Query:  WFSLVFRA-----FWGVQVESEALFGSTFQEGQWVSLEEGDVRWLHAIFRTKLAGGPEGGVTTWYQS
        W  L F +     F+ V ++++   G       W+ +   DV WLHAIFR K AGGP GGVTTWYQS
Subjt:  WFSLVFRA-----FWGVQVESEALFGSTFQEGQWVSLEEGDVRWLHAIFRTKLAGGPEGGVTTWYQS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTAAGTACCAGTTCTACTCTAATGAACAACCTGTTTGTGGTCCAACCATCAAACAGAAAACCCTCTCGTGCCATTGAGAGGGTAGGACCCTTTGTTCAAGACTC
GGAGACACCACTTAAGGGAACACTCATCTACTTCCCTAAAGTCGGGAAGAAGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATG
CAAAGCCAGCCATAGCAGAATCTGAGATCAACCTGTCAACCTCTGGTCTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAG
GAGGATCTCTGGTTTTCTCTGGTCTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGA
GGGCGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTAAGTACCAGTTCTACTCTAATGAACAACCTGTTTGTGGTCCAACCATCAAACAGAAAACCCTCTCGTGCCATTGAGAGGGTAGGACCCTTTGTTCAAGACTC
GGAGACACCACTTAAGGGAACACTCATCTACTTCCCTAAAGTCGGGAAGAAGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATG
CAAAGCCAGCCATAGCAGAATCTGAGATCAACCTGTCAACCTCTGGTCTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAG
GAGGATCTCTGGTTTTCTCTGGTCTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGA
GGGCGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MSLSTSSTLMNNLFVVQPSNRKPSRAIERVGPFVQDSETPLKGTLIYFPKVGKKRKKKKIFVVLRLKKIGKAHAKPAIAESEINLSTSGLLFGLSYTEGTKRAQDFRAKQ
EDLWFSLVFRAFWGVQVESEALFGSTFQEGQWVSLEEGDVRWLHAIFRTKLAGGPEGGVTTWYQSS