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Spg006718 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006718
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationscaffold1:56291766..56299136
RNA-Seq ExpressionSpg006718
SyntenySpg006718
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061124.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]7.8e-0466.67Show/hide
Query:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNKDKSEGLE
        MR EEANR KDKL SK+LNSVNANLVESS  ++DR K K   K + LE
Subjt:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNKDKSEGLE

XP_022157709.1 uncharacterized protein LOC111024362 [Momordica charantia]2.4e-0580.49Show/hide
Query:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNK
        MR EEANRQKDKL S+SLNSV ANLVESS+  KDRFKNK K
Subjt:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNK

TrEMBL top hitse value%identityAlignment
A0A5A7V1B9 Ty1-copia retrotransposon protein3.8e-0466.67Show/hide
Query:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNKDKSEGLE
        MR EEANR KDKL SK+LNSVNANLVESS  ++DR K K   K + LE
Subjt:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNKDKSEGLE

A0A6J1DAK7 uncharacterized protein LOC1110185594.9e-0452.54Show/hide
Query:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNK-------DKSEGLEFPIP
        MRIE+AN+Q DKL S+ +NSV ANL+ESS  +KDRFK K K        K++G +F  P
Subjt:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNK-------DKSEGLEFPIP

A0A6J1DXB7 uncharacterized protein LOC1110243621.2e-0580.49Show/hide
Query:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNK
        MR EEANRQKDKL S+SLNSV ANLVESS+  KDRFKNK K
Subjt:  MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCATTGAAGAAGCAAATAGGCAAAAGGATAAGTTGCAATCTAAGTCTTTGAATTCAGTTAATGCTAACTTAGTTGAATCTTCTGCTACATCAAAAGATAGGTTTAA
AAATAAAAATAAAGACAAATCTGAAGGATTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGGACCGAATTGATTTATTGGAGCTAAAATGTAAAGTTGGAGTTAATC
GGGTGTTCGGGACGAGAAAAGAGGCCAAGGAACCGAAAAGATTCAAGTTGGAGGCTTCTAAAAATGGACTTGTCCGAGAGCTAGCGTCGAGACACTGCTCTCTGGGCGTC
TCGACGCTAGCAGCATTCCTTAATCGAAACAGGCGGCAAAAGATTTTAGCCCTAATTTCGACTAGAGATCTTCTGTGGGAGCTGAAGGCAAGGCCAAGGAGTGGGAATCA
AGCGCGAAGACGTGGAGATCGTGACGGGGACTGGTTTACTATTTCGTGGTCCGGTCTTATGCAAACTCATTGCATAAGATACCCCCGCTCGCATGTCTCCTACATGGACG
TCTTGGATCAATACGTCTTAAACTTGATGAAGCATGACGTGATTGTGAAGGTGTGGTCGTCTTCTATGAAGGAGTGTAATGAATCTCTTTCTAGAGCTTTCACGATGACC
CAAGAATATATTGCTGAGCGACTTGAAGGAGCAAATTCTGTGCTGCAGCAAAGCTGGGAGCAAAACTGCCACGTCACAGCTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCATTGAAGAAGCAAATAGGCAAAAGGATAAGTTGCAATCTAAGTCTTTGAATTCAGTTAATGCTAACTTAGTTGAATCTTCTGCTACATCAAAAGATAGGTTTAA
AAATAAAAATAAAGACAAATCTGAAGGATTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGGACCGAATTGATTTATTGGAGCTAAAATGTAAAGTTGGAGTTAATC
GGGTGTTCGGGACGAGAAAAGAGGCCAAGGAACCGAAAAGATTCAAGTTGGAGGCTTCTAAAAATGGACTTGTCCGAGAGCTAGCGTCGAGACACTGCTCTCTGGGCGTC
TCGACGCTAGCAGCATTCCTTAATCGAAACAGGCGGCAAAAGATTTTAGCCCTAATTTCGACTAGAGATCTTCTGTGGGAGCTGAAGGCAAGGCCAAGGAGTGGGAATCA
AGCGCGAAGACGTGGAGATCGTGACGGGGACTGGTTTACTATTTCGTGGTCCGGTCTTATGCAAACTCATTGCATAAGATACCCCCGCTCGCATGTCTCCTACATGGACG
TCTTGGATCAATACGTCTTAAACTTGATGAAGCATGACGTGATTGTGAAGGTGTGGTCGTCTTCTATGAAGGAGTGTAATGAATCTCTTTCTAGAGCTTTCACGATGACC
CAAGAATATATTGCTGAGCGACTTGAAGGAGCAAATTCTGTGCTGCAGCAAAGCTGGGAGCAAAACTGCCACGTCACAGCTCGTTAG
Protein sequenceShow/hide protein sequence
MRIEEANRQKDKLQSKSLNSVNANLVESSATSKDRFKNKNKDKSEGLEFPIPLQRKQLDRIDLLELKCKVGVNRVFGTRKEAKEPKRFKLEASKNGLVRELASRHCSLGV
STLAAFLNRNRRQKILALISTRDLLWELKARPRSGNQARRRGDRDGDWFTISWSGLMQTHCIRYPRSHVSYMDVLDQYVLNLMKHDVIVKVWSSSMKECNESLSRAFTMT
QEYIAERLEGANSVLQQSWEQNCHVTAR