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Spg006733 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006733
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRWD domain-containing protein
Genome locationscaffold1:54545978..54548406
RNA-Seq ExpressionSpg006733
SyntenySpg006733
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0042254 - ribosome biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005844 - polysome (cellular component)
GO:0031428 - box C/D snoRNP complex (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0030515 - snoRNA binding (molecular function)
InterPro domainsIPR012974 - NOP5, N-terminal
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like
IPR040213 - GIR2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063636.1 putative nucleolar protein 5-2 [Cucumis melo var. makuwa]2.6e-1289.13Show/hide
Query:  CIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        C GE VN+LVLFETSAGFALFKVLDEGKL+KVEDL KDFSNAESAR
Subjt:  CIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

KAG6586290.1 putative nucleolar protein 5-2, partial [Cucurbita argyrosperma subsp. sororia]4.7e-1493.48Show/hide
Query:  CIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        CIGEVV +LVLFETSAGFALFKVLDEGKL KVEDLWKDFSNAESAR
Subjt:  CIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

KAG6599284.1 putative nucleolar protein 5-2, partial [Cucurbita argyrosperma subsp. sororia]6.1e-1487.76Show/hide
Query:  ISVCIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        +S C+ EVVN+LVLFETSAGFALFKVLDEGKL+KVEDLWKDFSNAESAR
Subjt:  ISVCIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

KAG7021137.1 putative nucleolar protein 5-2, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-1493.48Show/hide
Query:  CIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        CIGEVV +LVLFETSAGFALFKVLDEGKL KVEDLWKDFSNAESAR
Subjt:  CIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

NP_001305582.1 RWD domain-containing protein 1 [Solanum tuberosum]2.6e-1276.79Show/hide
Query:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDT-FSTVERICF
        QE EMEIEALEAILMDEFKE HSSESGLNTS RCFQIT+SPQE D    T+ R C+
Subjt:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDT-FSTVERICF

TrEMBL top hitse value%identityAlignment
A0A1S3CGU4 RWD domain-containing protein 1 isoform X12.1e-1289.13Show/hide
Query:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDT
        QE EMEIEALEAILMDEFKE HSSESGLNTSGRCFQITLSPQ+ +T
Subjt:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDT

A0A1S4D1Z3 RWD domain-containing protein 1-like isoform X11.6e-1279.25Show/hide
Query:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDTFSTVERI
        QE EMEIEALEAILMDEFKE HSSESGLNTS RCFQIT+SPQE D  ST   +
Subjt:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDTFSTVERI

A0A5A7V0T4 RWD domain-containing protein 1 isoform X12.1e-1289.13Show/hide
Query:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDT
        QE EMEIEALEAILMDEFKE HSSESGLNTSGRCFQITLSPQ+ +T
Subjt:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDT

A0A5A7VB38 Putative nucleolar protein 5-21.2e-1289.13Show/hide
Query:  CIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        C GE VN+LVLFETSAGFALFKVLDEGKL+KVEDL KDFSNAESAR
Subjt:  CIGEVVNILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

Q38HU0 RWD domain-containing protein1.2e-1276.79Show/hide
Query:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDT-FSTVERICF
        QE EMEIEALEAILMDEFKE HSSESGLNTS RCFQIT+SPQE D    T+ R C+
Subjt:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDT-FSTVERICF

SwissProt top hitse value%identityAlignment
O04656 Putative nucleolar protein 5-32.3e-0876.92Show/hide
Query:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        +LVLFETS GFALFKVLDEGKL+ VEDL  +F +AESAR
Subjt:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

O04658 Probable nucleolar protein 5-12.2e-0664.1Show/hide
Query:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        +L+LFET  GFA+FKVL+EGKL+ VEDL  +FS A+ AR
Subjt:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

Q4R779 Nucleolar protein 588.3e-0660.53Show/hide
Query:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESA
        +LVLFETS G+A+FKVL+E KL +V+ LWK+F   E A
Subjt:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESA

Q9MAB3 Probable nucleolar protein 5-23.4e-0766.67Show/hide
Query:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        +LVL+ET+AGFALFKV DEGK+  VEDL K+F   +SAR
Subjt:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

Q9Y2X3 Nucleolar protein 588.3e-0660.53Show/hide
Query:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESA
        +LVLFETS G+A+FKVL+E KL +V+ LWK+F   E A
Subjt:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESA

Arabidopsis top hitse value%identityAlignment
AT1G51730.1 Ubiquitin-conjugating enzyme family protein2.2e-1486.05Show/hide
Query:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQE
        QE EMEIEALEAILMDEFKE HSSESGLNTS RCFQIT++PQ+
Subjt:  QEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQE

AT3G05060.1 NOP56-like pre RNA processing ribonucleoprotein2.4e-0866.67Show/hide
Query:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        +LVL+ET+AGFALFKV DEGK+  VEDL K+F   +SAR
Subjt:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

AT5G04250.1 Cysteine proteinases superfamily protein9.5e-0586.36Show/hide
Query:  LSDQIYRTPEHHKFVREQVVNQ
        LSDQ+YR+PEHH FVREQVVNQ
Subjt:  LSDQIYRTPEHHKFVREQVVNQ

AT5G27120.1 NOP56-like pre RNA processing ribonucleoprotein1.6e-0764.1Show/hide
Query:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        +L+LFET  GFA+FKVL+EGKL+ VEDL  +FS A+ AR
Subjt:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR

AT5G27140.1 NOP56-like pre RNA processing ribonucleoprotein1.7e-0976.92Show/hide
Query:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR
        +LVLFETS GFALFKVLDEGKL+ VEDL  +F +AESAR
Subjt:  ILVLFETSAGFALFKVLDEGKLTKVEDLWKDFSNAESAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACTGCCAGTTTCGTGCTGTCAGATCAAATTTATCGAACTCCTGAGCACCATAAATTTGTGAGGGAGCAAGTTGTTAATCAGGAGCATGAGATGGAAATTGAAGC
ATTGGAAGCTATTCTTATGGACGAGTTCAAAGAATTTCACTCAAGTGAGAGTGGCCTAAACACTTCTGGTAGATGCTTTCAGATAACCCTGTCTCCACAGGAATTAGATA
CTTTTTCTACTGTAGAAAGGATATGTTTTGATTGCCCAAGTGATGCTGGAATTATATCTGTGTGTATTGGAGAGGTCGTGAATATTCTTGTCTTGTTCGAGACCTCGGCG
GGCTTTGCCCTGTTTAAAGTTTTGGATGAAGGGAAGCTCACCAAAGTTGAGGATTTGTGGAAGGATTTTTCCAATGCAGAATCTGCTAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAACTGCCAGTTTCGTGCTGTCAGATCAAATTTATCGAACTCCTGAGCACCATAAATTTGTGAGGGAGCAAGTTGTTAATCAGGAGCATGAGATGGAAATTGAAGC
ATTGGAAGCTATTCTTATGGACGAGTTCAAAGAATTTCACTCAAGTGAGAGTGGCCTAAACACTTCTGGTAGATGCTTTCAGATAACCCTGTCTCCACAGGAATTAGATA
CTTTTTCTACTGTAGAAAGGATATGTTTTGATTGCCCAAGTGATGCTGGAATTATATCTGTGTGTATTGGAGAGGTCGTGAATATTCTTGTCTTGTTCGAGACCTCGGCG
GGCTTTGCCCTGTTTAAAGTTTTGGATGAAGGGAAGCTCACCAAAGTTGAGGATTTGTGGAAGGATTTTTCCAATGCAGAATCTGCTAGATAG
Protein sequenceShow/hide protein sequence
MVTASFVLSDQIYRTPEHHKFVREQVVNQEHEMEIEALEAILMDEFKEFHSSESGLNTSGRCFQITLSPQELDTFSTVERICFDCPSDAGIISVCIGEVVNILVLFETSA
GFALFKVLDEGKLTKVEDLWKDFSNAESAR