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Spg006735 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006735
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA polymerase epsilon subunit C
Genome locationscaffold1:55795538..55797479
RNA-Seq ExpressionSpg006735
SyntenySpg006735
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570775.1 Chromatin accessibility complex 16kD protein, partial [Cucurbita argyrosperma subsp. sororia]3.7e-0889.47Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
        +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD

KAG7010622.1 Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-0889.47Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
        +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD

XP_004149539.2 chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]9.7e-0992.11Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
        +S VSKRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD

XP_008463933.1 PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]9.7e-0992.11Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
        +S VSKRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD

XP_022986059.1 DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima]3.7e-0889.47Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
        +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD

TrEMBL top hitse value%identityAlignment
A0A0A0KCQ2 CBFD_NFYB_HMF domain-containing protein4.7e-0992.11Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
        +S VSKRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD

A0A1S3CKU7 DNA polymerase epsilon subunit C4.7e-0992.11Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
        +S VSKRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD

A0A6J1CGZ0 DNA polymerase epsilon subunit C6.8e-0889.19Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGK
        +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGK
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGK

A0A6J1FVY8 DNA polymerase epsilon subunit C-like isoform X11.8e-0889.47Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
        +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD

A0A6J1JF10 DNA polymerase epsilon subunit C-like isoform X11.8e-0889.47Show/hide
Query:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD
        +S V KRKRYDFLSDFVPEKLKFEDALKERS AESGKD
Subjt:  ASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACAAGGGACCCAATTTCATAATGACTGTTTTCTTTCTGTATTCATGCTGCAAAATGAATATGAGCATGATGGTCATTTATTGAGTAGTGACAAGGAAGATGTCAT
GATCGAGGTATCAAAGAAGCATTGTTTTAGATGTAAGATTTTCACTGCAGCAGTAGTAAGTGTAAGACCCTTCTTTGTTGTTGCAGCATCAGCAGTTTCCAAAAGGAAGA
GATATGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTAAAGGAGAGAAGCACGGCAGAGTCTGGGAAAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATACAAGGGACCCAATTTCATAATGACTGTTTTCTTTCTGTATTCATGCTGCAAAATGAATATGAGCATGATGGTCATTTATTGAGTAGTGACAAGGAAGATGTCAT
GATCGAGGTATCAAAGAAGCATTGTTTTAGATGTAAGATTTTCACTGCAGCAGTAGTAAGTGTAAGACCCTTCTTTGTTGTTGCAGCATCAGCAGTTTCCAAAAGGAAGA
GATATGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTAAAGGAGAGAAGCACGGCAGAGTCTGGGAAAGACTAG
Protein sequenceShow/hide protein sequence
MIQGTQFHNDCFLSVFMLQNEYEHDGHLLSSDKEDVMIEVSKKHCFRCKIFTAAVVSVRPFFVVAASAVSKRKRYDFLSDFVPEKLKFEDALKERSTAESGKD