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Spg006774 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006774
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold1:54553267..54555061
RNA-Seq ExpressionSpg006774
SyntenySpg006774
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-1453.47Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS----------------------KEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S                      +EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS----------------------KEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-1459.34Show/hide
Query:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGGLGG
        F+E+SI YMTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES RS+S+       DDV WLHAIFR K AGG GG
Subjt:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGGLGG

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]9.8e-1454.55Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGGLGGGVTGSLGFTME
        +SIDY+TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS S S+       DDV WLH +FR K  GG G GVT +   T E
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGGLGGGVTGSLGFTME

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]7.5e-1456.82Show/hide
Query:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGG
        F+E+SIDY+TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+S+       DDV WLH +FR K   G
Subjt:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-1453.47Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS----------------------KEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S                      +EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS----------------------KEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein4.7e-1454.55Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGGLGGGVTGSLGFTME
        +SIDY+TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS S S+       DDV WLH +FR K  GG G GVT +   T E
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGGLGGGVTGSLGFTME

A0A5A7VMG9 Reverse transcriptase2.1e-1453.47Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS----------------------KEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S                      +EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS----------------------KEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

A0A5D3BP54 Gag/pol protein1.2e-1459.34Show/hide
Query:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGGLGG
        F+E+SI YMTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES RS+S+       DDV WLHAIFR K AGG GG
Subjt:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGGLGG

A0A5D3CIF4 Gag protease polyprotein3.6e-1456.82Show/hide
Query:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGG
        F+E+SIDY+TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+S+       DDV WLH +FR K   G
Subjt:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSKE------DDVRWLHAIFRTKLAGG

A0A5D3DX39 Reverse transcriptase2.1e-1453.47Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS----------------------KEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S                      +EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS----------------------KEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGAATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGCTCTATTTGATAA
CGATAAGCAGGCATGTTCTACTGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAG
AGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTA
GCAGGTGGTCTGGGAGGGGGTGTGACAGGGTCTCTTGGTTTCACGATGGAGAATATGGAGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGAATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGCTCTATTTGATAA
CGATAAGCAGGCATGTTCTACTGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAG
AGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTA
GCAGGTGGTCTGGGAGGGGGTGTGACAGGGTCTCTTGGTTTCACGATGGAGAATATGGAGAGTTGA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQENLWFPLVFRAFWVVQVESEALFDNDKQACSTVFMGFSEISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSKEDDVRWLHAIFRTKL
AGGLGGGVTGSLGFTMENMES