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Spg006781 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006781
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:55175584..55179350
RNA-Seq ExpressionSpg006781
SyntenySpg006781
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035315.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.8e-1462.35Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE RMAE+EKK+NML+K+VEE+DYEIA LK+ +E RD AESS    +K  DKG   + + Q Q+S SIA+LSVQQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.4e-1462.35Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE RM E+EKK+NML+K+VEE+DYEIASLK+ +E RD AESS    +K  DKG   + + Q Q+S SIA+LSVQQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

KAA0051517.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.8e-1563.53Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE R+AE+EKK+NML+K+VEE+DYEIASLK+ +E RD AESS    +K  DKG T + + Q Q+S SIA+LSVQQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

TYK14321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.8e-1462.35Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE RMAE+EKK+NML+K+VEE+DYEIA LK+ +E RD AESS    +K  DKG   + + Q Q+S SIA+LSVQQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

TYK25809.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.4e-1462.35Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE+RMAE+EKK+NML+K VEE+D+EIASLK+ +E R+ AESS T  IK  DKGN  + + Q Q+S SI +LS+QQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

TrEMBL top hitse value%identityAlignment
A0A5A7T1J1 Ty3-gypsy retrotransposon protein2.8e-1462.35Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE RMAE+EKK+NML+K+VEE+DYEIA LK+ +E RD AESS    +K  DKG   + + Q Q+S SIA+LSVQQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

A0A5D3C4W1 Ty3-gypsy retrotransposon protein1.6e-1462.35Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE RM E+EKK+NML+K+VEE+DYEIASLK+ +E RD AESS    +K  DKG   + + Q Q+S SIA+LSVQQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

A0A5D3CRB1 Ty3-gypsy retrotransposon protein2.8e-1462.35Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE RMAE+EKK+NML+K+VEE+DYEIA LK+ +E RD AESS    +K  DKG   + + Q Q+S SIA+LSVQQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

A0A5D3DLJ7 Ty3-gypsy retrotransposon protein3.3e-1563.53Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE R+AE+EKK+NML+K+VEE+DYEIASLK+ +E RD AESS    +K  DKG T + + Q Q+S SIA+LSVQQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

A0A5D3DR45 Ty3-gypsy retrotransposon protein2.1e-1462.35Show/hide
Query:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI
        TSE+RMAE+EKK+NML+K VEE+D+EIASLK+ +E R+ AESS T  IK  DKGN  + + Q Q+S SI +LS+QQLQ+MI NSI
Subjt:  TSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIK--DKGNTTIHD-QSQHSASIATLSVQQLQDMIINSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCGCACTCCACCTATCGACGGCTGAGAAAACGAGATGAAGATAGATTAATCCGAAAGGCCAAGTCTGCGAGATTGGAAGAAAAGAGTGAGGAGAGAGCCGAGCC
AAATTCATCAGAAGCAAGGGCTATGGCAAAAGAAGAAGCAGATAAACTGGACGAAGAAAGGACAAGGAAACGTAATTGGGACCGATTATACAGAGTCAGAGAACTCAGAG
TCCAGAGTCGTCAGAAGTCAAAGAATCCAGAGATTTCAGAATATCCAAGATTCAGAATTCGGCCAACGCAAGACTCAGAAGATCCAACGACTAGAAGACTCCAAAGAATC
AACCGTCTGTTCATCAAGATACAAGTTGAAGATTCAACCTCCCTCCATCTGAGATCAAGCTCGCAAGCCCTCAGATCAAATTCAATAAAATCAAGAACTAGTGAAGAAAG
GATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATTGTTGAAGAGAAAGACTATGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGACGAGATGTCGCTGAAT
CAAGTCAGACCCCTGCCATCAAAGACAAGGGAAATACCACTATACACGATCAGTCACAACACTCCGCTTCTATTGCTACACTGTCTGTACAGCAGCTCCAAGATATGATC
ATAAATTCCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCGCACTCCACCTATCGACGGCTGAGAAAACGAGATGAAGATAGATTAATCCGAAAGGCCAAGTCTGCGAGATTGGAAGAAAAGAGTGAGGAGAGAGCCGAGCC
AAATTCATCAGAAGCAAGGGCTATGGCAAAAGAAGAAGCAGATAAACTGGACGAAGAAAGGACAAGGAAACGTAATTGGGACCGATTATACAGAGTCAGAGAACTCAGAG
TCCAGAGTCGTCAGAAGTCAAAGAATCCAGAGATTTCAGAATATCCAAGATTCAGAATTCGGCCAACGCAAGACTCAGAAGATCCAACGACTAGAAGACTCCAAAGAATC
AACCGTCTGTTCATCAAGATACAAGTTGAAGATTCAACCTCCCTCCATCTGAGATCAAGCTCGCAAGCCCTCAGATCAAATTCAATAAAATCAAGAACTAGTGAAGAAAG
GATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATTGTTGAAGAGAAAGACTATGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGACGAGATGTCGCTGAAT
CAAGTCAGACCCCTGCCATCAAAGACAAGGGAAATACCACTATACACGATCAGTCACAACACTCCGCTTCTATTGCTACACTGTCTGTACAGCAGCTCCAAGATATGATC
ATAAATTCCATATGA
Protein sequenceShow/hide protein sequence
MGSHSTYRRLRKRDEDRLIRKAKSARLEEKSEERAEPNSSEARAMAKEEADKLDEERTRKRNWDRLYRVRELRVQSRQKSKNPEISEYPRFRIRPTQDSEDPTTRRLQRI
NRLFIKIQVEDSTSLHLRSSSQALRSNSIKSRTSEERMAEVEKKINMLLKIVEEKDYEIASLKSQMERRDVAESSQTPAIKDKGNTTIHDQSQHSASIATLSVQQLQDMI
INSI