; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006793 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006793
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionANK_REP_REGION domain-containing protein
Genome locationscaffold1:54860113..54870074
RNA-Seq ExpressionSpg006793
SyntenySpg006793
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577428.1 Protein LHCP TRANSLOCATION DEFECT, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3788.54Show/hide
Query:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        SR   I  ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV K
Subjt:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

KAG7015501.1 Protein LHCP TRANSLOCATION DEFECT [Cucurbita argyrosperma subsp. argyrosperma]1.8e-3788.54Show/hide
Query:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        SR   I  ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV K
Subjt:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]1.8e-3788.54Show/hide
Query:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        SR   I  ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV K
Subjt:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]1.8e-3788.54Show/hide
Query:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        SR   I  ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV K
Subjt:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

XP_023520446.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita pepo subsp. pepo]3.9e-3787.5Show/hide
Query:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        SR   I  ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELL+AGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV K
Subjt:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein8.0e-3689.77Show/hide
Query:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA NEEIKDFILNFS +K
Subjt:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT4.0e-3589.77Show/hide
Query:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA NEEIKDFIL FS +K
Subjt:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

A0A6J1DAX7 protein LHCP TRANSLOCATION DEFECT2.1e-3690.91Show/hide
Query:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAP+EEIKDFILNF+V+K
Subjt:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT8.5e-3888.54Show/hide
Query:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        SR   I  ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV K
Subjt:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT8.5e-3888.54Show/hide
Query:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        SR   I  ++  YFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV K
Subjt:  SRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT1.8e-3282.35Show/hide
Query:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFS
        ++  YFNYMGMLAVEGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA  ++ ++FIL F+
Subjt:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFS

A3BKF2 Protein LHCP TRANSLOCATION DEFECT1.8e-3282.35Show/hide
Query:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFS
        ++  YFNYMGMLAVEGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA  ++ ++FIL F+
Subjt:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFS

Q8VY88 Protein LHCP TRANSLOCATION DEFECT9.7e-3173.86Show/hide
Query:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        ++  YFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S +K
Subjt:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein6.9e-3273.86Show/hide
Query:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK
        ++  YFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S +K
Subjt:  EISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGTCTTCCACAGGATTTTCTTTTTGTTTGGATTAGATGTAGATGCTTCTTTGGCTGAATCCAGGTTAATTGAGCTTAGGATATGTCGGGAGCCGATCACGTTAAT
TGGTGTTAATTCAGACCAATTATGGAGTTTTGGAGCCATCTTGATGTCCTGGACGACGAGGAGATTGAAGCCCTGTACCGAGAAGAAGCGAGACAAGACCGAGAATCAAA
GCAGGAAGTCGAGATTTGAGGCTGGCGTCGAGACGCCGACGCGAGATCTGGTCGGAGTGAATAGTTTGCAGAGTCTCAACGTTGCCCTTAGCGTCTCGACGTTGCCGTAT
TTTCTATATATATGTAGCCTCGAATTCACGGTTAGCAAGATAATTAGCACAGGTGCTGAGAGGGTGTATGGCACGACGAAGCTTTGCGACTATGCCATTCTTGGCGTAAT
TAACGAATTTCAAAGAGAGATTGAATATTTTGTGGTTCTGTCTTATACAAACTCATTGCATGTTTGTAGGCTGGAGTTGGCCTCGACCAATCATAGAAAAATAGAGGAAA
CAGGGCAAGATAGCAGAAATGTGAACGCATTTCTGCCAAGGCCAAATGAAATGCGACTGCATTTCTGGACAGAAACAGACAGTCACAACTCGCATAAGTTTCCTCTCCTT
CAAATGAGTCGTGAGGAGGTCTTGAGAAGCTTCTCCATCTTTCTCTTCTTCTTGTTCATTCTTCATGGTGGATGTGAGTCAAATGAACTAAATCGAGCTGCCAGAAGACT
CAACACGCTCGAGATACTCAGCCATGGCTTCCGTCACCTGCACTACCTCCATAAATCTCACCCCAAGACCCTTCAATTCTCGGCCCCCATCGAAATTGGGTTCCCAGTTT
CTTGGTTTTCAATCGAAGCTCCGATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGTCAAATGCCGAAAGTGCCGGCATTTACGGCAGCCAGTCCCGAGATGACTTCA
ATAGAGACGATGTTGAGCAGAACTGCAAACATTACTGTAGAAATTTCTTGGTATTTCAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAGGCTCT
ATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGTTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAAGAGCTCCTGAGAGCTGGAGCTAAGTATGATGTGA
AAGATGTGGATGGCCGAACTGCCATTGATAGGGCTCCTAATGAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTCCGAAAGGGCATGATTTGGTCTCTAAATGTAACT
GGTTTGGGATTTTTTAATGCAACAAATGCTGGTCTCTTCGAGTTTGATTTTTTTGCACCAACCAAGGAGGGGCTTGAATTTACAAGTAAACTACCTTCTTGGGGCAAGAA
TGTCTTGCTCGAGGTGTCTGCAGGACTGATTGAACCGTCTTTTATCTCGGTATTATCTTCAATAGAAATATCATTAACTCTTTCAGATGGGCTTGCTAGCAAGTCATTTT
CATCGGATCAGGTCCTTGGTTGCCTTGATTTGCCTCTTCCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGTCTTCCACAGGATTTTCTTTTTGTTTGGATTAGATGTAGATGCTTCTTTGGCTGAATCCAGGTTAATTGAGCTTAGGATATGTCGGGAGCCGATCACGTTAAT
TGGTGTTAATTCAGACCAATTATGGAGTTTTGGAGCCATCTTGATGTCCTGGACGACGAGGAGATTGAAGCCCTGTACCGAGAAGAAGCGAGACAAGACCGAGAATCAAA
GCAGGAAGTCGAGATTTGAGGCTGGCGTCGAGACGCCGACGCGAGATCTGGTCGGAGTGAATAGTTTGCAGAGTCTCAACGTTGCCCTTAGCGTCTCGACGTTGCCGTAT
TTTCTATATATATGTAGCCTCGAATTCACGGTTAGCAAGATAATTAGCACAGGTGCTGAGAGGGTGTATGGCACGACGAAGCTTTGCGACTATGCCATTCTTGGCGTAAT
TAACGAATTTCAAAGAGAGATTGAATATTTTGTGGTTCTGTCTTATACAAACTCATTGCATGTTTGTAGGCTGGAGTTGGCCTCGACCAATCATAGAAAAATAGAGGAAA
CAGGGCAAGATAGCAGAAATGTGAACGCATTTCTGCCAAGGCCAAATGAAATGCGACTGCATTTCTGGACAGAAACAGACAGTCACAACTCGCATAAGTTTCCTCTCCTT
CAAATGAGTCGTGAGGAGGTCTTGAGAAGCTTCTCCATCTTTCTCTTCTTCTTGTTCATTCTTCATGGTGGATGTGAGTCAAATGAACTAAATCGAGCTGCCAGAAGACT
CAACACGCTCGAGATACTCAGCCATGGCTTCCGTCACCTGCACTACCTCCATAAATCTCACCCCAAGACCCTTCAATTCTCGGCCCCCATCGAAATTGGGTTCCCAGTTT
CTTGGTTTTCAATCGAAGCTCCGATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGTCAAATGCCGAAAGTGCCGGCATTTACGGCAGCCAGTCCCGAGATGACTTCA
ATAGAGACGATGTTGAGCAGAACTGCAAACATTACTGTAGAAATTTCTTGGTATTTCAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAGGCTCT
ATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGTTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAAGAGCTCCTGAGAGCTGGAGCTAAGTATGATGTGA
AAGATGTGGATGGCCGAACTGCCATTGATAGGGCTCCTAATGAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTCCGAAAGGGCATGATTTGGTCTCTAAATGTAACT
GGTTTGGGATTTTTTAATGCAACAAATGCTGGTCTCTTCGAGTTTGATTTTTTTGCACCAACCAAGGAGGGGCTTGAATTTACAAGTAAACTACCTTCTTGGGGCAAGAA
TGTCTTGCTCGAGGTGTCTGCAGGACTGATTGAACCGTCTTTTATCTCGGTATTATCTTCAATAGAAATATCATTAACTCTTTCAGATGGGCTTGCTAGCAAGTCATTTT
CATCGGATCAGGTCCTTGGTTGCCTTGATTTGCCTCTTCCTGCTTGA
Protein sequenceShow/hide protein sequence
MIVFHRIFFLFGLDVDASLAESRLIELRICREPITLIGVNSDQLWSFGAILMSWTTRRLKPCTEKKRDKTENQSRKSRFEAGVETPTRDLVGVNSLQSLNVALSVSTLPY
FLYICSLEFTVSKIISTGAERVYGTTKLCDYAILGVINEFQREIEYFVVLSYTNSLHVCRLELASTNHRKIEETGQDSRNVNAFLPRPNEMRLHFWTETDSHNSHKFPLL
QMSREEVLRSFSIFLFFLFILHGGCESNELNRAARRLNTLEILSHGFRHLHYLHKSHPKTLQFSAPIEIGFPVSWFSIEAPMGLELRAGSILGQMPKVPAFTAASPEMTS
IETMLSRTANITVEISWYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVRKGMIWSLNVT
GLGFFNATNAGLFEFDFFAPTKEGLEFTSKLPSWGKNVLLEVSAGLIEPSFISVLSSIEISLTLSDGLASKSFSSDQVLGCLDLPLPA