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Spg006794 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006794
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed DNA polymerase
Genome locationscaffold1:55292892..55295914
RNA-Seq ExpressionSpg006794
SyntenySpg006794
Gene Ontology termsGO:0006261 - DNA-dependent DNA replication (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR002298 - DNA polymerase A
IPR008918 - Helix-hairpin-helix motif, class 2
IPR020045 - DNA polymerase I-like, H3TH domain
IPR036279 - 5'-3' exonuclease, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149355.1 uncharacterized protein LOC111017796 isoform X1 [Momordica charantia]6.8e-3296.05Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

XP_022149357.1 uncharacterized protein LOC111017796 isoform X3 [Momordica charantia]6.8e-3296.05Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

XP_022149360.1 uncharacterized protein LOC111017796 isoform X5 [Momordica charantia]6.8e-3296.05Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

XP_022933106.1 uncharacterized protein LOC111439872 isoform X1 [Cucurbita moschata]3.4e-3194.74Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDV+SLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

XP_023543412.1 uncharacterized protein LOC111803303 isoform X2 [Cucurbita pepo subsp. pepo]3.4e-3194.74Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDV+SLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

TrEMBL top hitse value%identityAlignment
A0A6J1D5H5 DNA-directed DNA polymerase3.3e-3296.05Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

A0A6J1D5H7 DNA-directed DNA polymerase3.3e-3296.05Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

A0A6J1D7Q6 DNA-directed DNA polymerase3.3e-3296.05Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

A0A6J1F3S3 DNA-directed DNA polymerase1.6e-3194.74Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDV+SLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

A0A6J1HVF9 DNA-directed DNA polymerase1.6e-3194.74Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        MVSFGLEDFAEKYG LEPSQFVDV+SLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK+L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

SwissProt top hitse value%identityAlignment
P30313 DNA polymerase I, thermostable2.4e-1161.4Show/hide
Query:  EKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVE
        EKY GL P Q+VD  +L GD SDNIPGV GIG   A +LI  +G+LENL QH+DQV+
Subjt:  EKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVE

P52026 DNA polymerase I2.5e-1350.68Show/hide
Query:  SFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVL
        S+  E   EKY GL P Q VD+  L+GDKSDNIPGV GIG   AV+L+ +FGT+EN+L  +D+++ E++++ L
Subjt:  SFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVL

P52028 DNA polymerase I, thermostable8.1e-1253.97Show/hide
Query:  EKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK
        EKY GL P Q+VD  +LVGD SDN+PGV GIG   A++L+  +G+LENLL+++D+V+ E +R+
Subjt:  EKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK

P80194 DNA polymerase I, thermostable1.4e-1152.38Show/hide
Query:  EKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK
        +KY GL+P Q+VD  +LVGD SDN+PGV GIG   A++L+  +G+LENLL+++D+V+ E +R+
Subjt:  EKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRK

Q04957 DNA polymerase I1.9e-1346.91Show/hide
Query:  EDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLLYRRKTYYIYRK
        E   EKY GL P Q VD+  L+GDKSDNIPGV GIG   AV+L+ +FGT+EN+L  +D+++ E++++ L   R+   + +K
Subjt:  EDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLLYRRKTYYIYRK

Arabidopsis top hitse value%identityAlignment
AT3G52050.1 5'-3' exonuclease family protein5.4e-2769.74Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLLQ VD++++ +I++ L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

AT3G52050.2 5'-3' exonuclease family protein5.4e-2769.74Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLLQ VD++++ +I++ L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

AT3G52050.3 5'-3' exonuclease family protein5.4e-2769.74Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLLQ VD++++ +I++ L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

AT3G52050.4 5'-3' exonuclease family protein5.4e-2769.74Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL
        M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLLQ VD++++ +I++ L+
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLL

AT3G52050.5 5'-3' exonuclease family protein4.1e-2771.62Show/hide
Query:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKV
        M SFG+EDFA+K+G LEP+QFVD+I+L GDKSDNIPGVDGIGNV+AV+LI+RFGTLENLLQ VD++++ +I++V
Subjt:  MVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGAGGTAACCGATGGCAGCTCAACCGTGATGATTGACGGAGGTGGCGGCGCGGTGACGATTGGAAGGATGGTGTCTTTTGGGTTGGAGGATTTTGCTGAAAAATA
TGGAGGTCTGGAACCTTCTCAGTTTGTTGATGTGATTTCTTTAGTCGGTGACAAATCTGATAATATTCCAGGAGTCGATGGAATTGGAAATGTCAATGCCGTGCAACTTA
TCACTAGATTTGGCACGTTAGAAAATTTGTTGCAACATGTTGATCAAGTGGAAGATGAACGTATTAGGAAGGTCCTCTTATATAGGAGAAAGACCTATTACATATATAGA
AAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGAGGTAACCGATGGCAGCTCAACCGTGATGATTGACGGAGGTGGCGGCGCGGTGACGATTGGAAGGATGGTGTCTTTTGGGTTGGAGGATTTTGCTGAAAAATA
TGGAGGTCTGGAACCTTCTCAGTTTGTTGATGTGATTTCTTTAGTCGGTGACAAATCTGATAATATTCCAGGAGTCGATGGAATTGGAAATGTCAATGCCGTGCAACTTA
TCACTAGATTTGGCACGTTAGAAAATTTGTTGCAACATGTTGATCAAGTGGAAGATGAACGTATTAGGAAGGTCCTCTTATATAGGAGAAAGACCTATTACATATATAGA
AAGGAATAA
Protein sequenceShow/hide protein sequence
MSEVTDGSSTVMIDGGGGAVTIGRMVSFGLEDFAEKYGGLEPSQFVDVISLVGDKSDNIPGVDGIGNVNAVQLITRFGTLENLLQHVDQVEDERIRKVLLYRRKTYYIYR
KE