CuGenDBv2

Gene ID	Spg006795
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold1:55982452..55986384
RNA-Seq Expression	Spg006795
Synteny	Spg006795
Gene Ontology terms	GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]

1.2e-31

34.93

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI    +L++ L +IH+   + D  SWSL  S +++ KS F  L++ S   S   + L+W    P K+K F+W +A++ +NT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY
        ++    ALSP  C LC++  E +DHLF+HC      W+ + +L  I +  P+ + D +      +   ++  V+   A  A LW +W+ERN R FEDKS 
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY

Query:  NFDSFCDCV
        N ++  D +
Subjt:  NFDSFCDCV

CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]

2.0e-10

34.4

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Query:  MENLKRLKLYLREWNKDILSKEVCKKREILSRIDHIDRLEEQSNIQNFEVEDRKCLKAKLMQLTVNEQRCLSQKSKIKWLREGDENTNLFHTWTTARKNR
        M  L+ LK  L+EWNK+     + +K+ IL  I + D +E++  +    +  R   K +L +L + E+    QK+++KW++EGD N+  FH     R+NR
Subjt:  MENLKRLKLYLREWNKDILSKEVCKKREILSRIDHIDRLEEQSNIQNFEVEDRKCLKAKLMQLTVNEQRCLSQKSKIKWLREGDENTNLFHTWTTARKNR

Query:  AFISILEDDTGNILSSKAEIENEIL
         FI +LE++ G +L +   I+ EIL
Subjt:  AFISILEDDTGNILSSKAEIENEIL

CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]

1.6e-31

34.45

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI    +L++ L ++H+   + D  SWSL  S +++ KS F  L++ S   S   + L+W    P K+K F+W +A++ +NT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY
        ++    ALSP  C LC++  E +DHLF+HC      W+ + +L  I +  P+ + D +      +   ++  V+   A  A LW +W+ERN R FEDKS 
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY

Query:  NFDSFCDCV
        N ++  D +
Subjt:  NFDSFCDCV

RVW15141.1 putative ribonuclease H protein [Vitis vinifera]

7.2e-32

35.41

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI    +L++ L +IH+   + D  SWSL  S +++ KS F  L++ S   S   + L+W    P K+K F+W +A++ +NT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY
        ++    ALSP  C LC++  E  DHLF+HC      W+ + +L  I +  P+ I D L      +   ++  ++   A  A LW +W+ERN R FEDKS 
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY

Query:  NFDSFCDCV
        N ++  D +
Subjt:  NFDSFCDCV

RVW25634.1 putative ribonuclease H protein [Vitis vinifera]

1.6e-31

34.2

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI     L++    +HI   + D  SWSL  S +++ KS F  L+++S       +  +W    P KVK F+W +A++ +NT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFI---ARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFED
        ++    ALSP  C+LC+K  E +DHLF+HC      W+ +   A++ W+S   P+ I D L      +   ++  V+   A  A +W +W+ERN R FED
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFI---ARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFED

Query:  KSYNFDSFCDCVT---KYGLMVDFFTQEFFL
        K+ N +   D +     +GL V  F + F L
Subjt:  KSYNFDSFCDCVT---KYGLMVDFFTQEFFL

RVW52490.1 putative ribonuclease H protein [Vitis vinifera]

5.5e-32

35.24

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI    +L+  L  +HI   + D  SWS+  S +++ KS F  L+++S       +  +W    P KVK F+W +A++ LNT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY
        ++    ALSP+ C+LC+K  E +DHLF+HC      W+ + +L  + +  P+ I D  +     +   +K  V+   A  A +W +W+ERN R FEDK+ 
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY

Query:  N----FDSFC
        N    +DS C
Subjt:  N----FDSFC

TrEMBL top hits

e value

%identity

Alignment

A0A438BVX7 Putative ribonuclease H protein

3.5e-32

35.41

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI    +L++ L +IH+   + D  SWSL  S +++ KS F  L++ S   S   + L+W    P K+K F+W +A++ +NT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY
        ++    ALSP  C LC++  E  DHLF+HC      W+ + +L  I +  P+ I D L      +   ++  ++   A  A LW +W+ERN R FEDKS 
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY

Query:  NFDSFCDCV
        N ++  D +
Subjt:  NFDSFCDCV

A0A438EXL3 Putative ribonuclease H protein

2.7e-32

35.24

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI    +L+  L  +HI   + D  SWS+  S +++ KS F  L+++S       +  +W    P KVK F+W +A++ LNT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY
        ++    ALSP+ C+LC+K  E +DHLF+HC      W+ + +L  + +  P+ I D  +     +   +K  V+   A  A +W +W+ERN R FEDK+ 
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY

Query:  N----FDSFC
        N    +DS C
Subjt:  N----FDSFC

A5BPI6 Uncharacterized protein

5.9e-32

34.93

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI    +L++ L +IH+   + D  SWSL  S +++ KS F  L++ S   S   + L+W    P K+K F+W +A++ +NT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY
        ++    ALSP  C LC++  E +DHLF+HC      W+ + +L  I +  P+ + D +      +   ++  V+   A  A LW +W+ERN R FEDKS 
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY

Query:  NFDSFCDCV
        N ++  D +
Subjt:  NFDSFCDCV

A5BPI6 Uncharacterized protein

9.9e-11

34.4

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Query:  MENLKRLKLYLREWNKDILSKEVCKKREILSRIDHIDRLEEQSNIQNFEVEDRKCLKAKLMQLTVNEQRCLSQKSKIKWLREGDENTNLFHTWTTARKNR
        M  L+ LK  L+EWNK+     + +K+ IL  I + D +E++  +    +  R   K +L +L + E+    QK+++KW++EGD N+  FH     R+NR
Subjt:  MENLKRLKLYLREWNKDILSKEVCKKREILSRIDHIDRLEEQSNIQNFEVEDRKCLKAKLMQLTVNEQRCLSQKSKIKWLREGDENTNLFHTWTTARKNR

Query:  AFISILEDDTGNILSSKAEIENEIL
         FI +LE++ G +L +   I+ EIL
Subjt:  AFISILEDDTGNILSSKAEIENEIL

A5BPI6 Uncharacterized protein

7.8e-32

34.45

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI    +L++ L ++H+   + D  SWSL  S +++ KS F  L++ S   S   + L+W    P K+K F+W +A++ +NT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY
        ++    ALSP  C LC++  E +DHLF+HC      W+ + +L  I +  P+ + D +      +   ++  V+   A  A LW +W+ERN R FEDKS 
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY

Query:  NFDSFCDCV
        N ++  D +
Subjt:  NFDSFCDCV

A5BQD9 Reverse transcriptase domain-containing protein

7.6e-11

34.4

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Query:  MENLKRLKLYLREWNKDILSKEVCKKREILSRIDHIDRLEEQSNIQNFEVEDRKCLKAKLMQLTVNEQRCLSQKSKIKWLREGDENTNLFHTWTTARKNR
        M  L+ LK  L+EWNK+     + +K+ IL  I + D +E++  +    +  R   K +L +L + E+    QK+++KW++EGD N+  FH     R+NR
Subjt:  MENLKRLKLYLREWNKDILSKEVCKKREILSRIDHIDRLEEQSNIQNFEVEDRKCLKAKLMQLTVNEQRCLSQKSKIKWLREGDENTNLFHTWTTARKNR

Query:  AFISILEDDTGNILSSKAEIENEIL
         FI +LE++ G +L +   I+ EIL
Subjt:  AFISILEDDTGNILSSKAEIENEIL

A5BQD9 Reverse transcriptase domain-containing protein

7.8e-32

34.45

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Query:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ
        SW+  FRR L D EI    +L++ L ++H+   + D  SWSL  S +++ KS F  L++ S   S   + L+W    P K+K F+W +A++ +NT++ LQ
Subjt:  SWDLAFRRGLFDREITSWVALVEKLHNIHIGHDL-DSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQ

Query:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY
        ++    ALSP  C LC++  E +DHLF+HC      W+ + +L  I +  P+ + D +      +   ++  V+   A  A LW +W+ERN R FEDKS 
Subjt:  IKFKQWALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSY

Query:  NFDSFCDCV
        N ++  D +
Subjt:  NFDSFCDCV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G33710.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.1e-06

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Query:  DLDSVSWSLEES--SMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQIKFKQWALS-PSACRLCVKDEENLDHLFIHC
        +LD   W +E+   + +S+   +  L   S  +S   +  +W   +  K    +W      L T  RL      W +   + C LC  D E+ DHLF+ C
Subjt:  DLDSVSWSLEES--SMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQIKFKQWALS-PSACRLCVKDEENLDHLFIHC

Query:  DFAWKAWNFIA---RLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERN
        +FA   W+ ++    L   SF +   + DW     T    +R    +     ++ L+++WK+RN
Subjt:  DFAWKAWNFIA---RLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERN

AT1G45063.1 copper ion binding;electron carriers

5.0e-07

29.46

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Query:  TDERLQI--KFKQWALS-PSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDD---WLYEGLTAWNLKRKAKVIASCAFRATLWSLWK
        T  RL I  +F  W +  PS C LC   +E   H+F  C F+ + W+F      ++   P+   D   WL          +K   I   A++A+++ +W+
Subjt:  TDERLQI--KFKQWALS-PSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDD---WLYEGLTAWNLKRKAKVIASCAFRATLWSLWK

Query:  ERNTRTFEDKSY
        ERN R   +KS+
Subjt:  ERNTRTFEDKSY

Sequences

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CDS sequence

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ATGGGAGGCTTGATCGGCACTAGTGAGCAGATGGAAGATTGCCCACAAGCCTTAGCGATTATCCCGCCAAAAAATACGGAGACCAAGCTTGATCAAGTAGATAGGAGGCT
GGTGAAATCAGTCTGGAGCTCTCGTCATGTTGCTTGGCAGTCTTTAGATGCGAGTAATTCAACAGGGGGTATCTTGATCATAGTCATGGAAAATCTTAAACGTCTGAAAC
TGTACCTGCGAGAGTGGAACAAAGACATCCTCTCGAAAGAAGTATGCAAGAAAAGGGAGATTCTTAGTCGGATTGATCATATTGACCGCTTAGAAGAACAGAGCAATATC
CAAAATTTTGAGGTGGAAGATAGAAAATGCCTCAAGGCTAAGCTGATGCAACTGACTGTGAATGAGCAAAGATGTCTTAGTCAGAAGAGCAAGATTAAATGGCTTAGGGA
AGGTGATGAGAACACCAACCTTTTTCACACATGGACCACAGCCAGAAAGAACAGGGCCTTCATTTCGATCCTTGAAGATGATACCGGAAATATCCTTTCCTCTAAAGCTG
AGATTGAAAATGAAATATTAATGGTGAACTCATCTAAGTCGGCTATGATAGGGATAGATGTGGAGATGAATGAGCTGAATAATAGGGCTATTTCCTTTGGTTATTGCTGG
AATAGTGGACAACAGTCATGGGACTTGGCCTTTAGAAGAGGTCTCTTTGATAGAGAAATCACCAGTTGGGTGGCTTTGGTGGAGAAACTACACAATATTCACATTGGGCA
TGACTTAGACTCGGTTAGCTGGTCCCTTGAGGAATCGAGCATGTATTCGACTAAGTCCCTATTCTACAAGTTGGCAAAATTTTCTCCCAAAATCAGCTCTACCACCAGTA
ATTTAATATGGAAACATAACAGCCCGAAGAAGGTCAAGGTTTTTTTGTGGTCCCTAGCCTATCGTAGCCTAAATACCGATGAGAGACTCCAAATCAAGTTCAAACAATGG
GCCCTTTCCCCATCGGCTTGCAGATTGTGCGTTAAAGATGAGGAAAACCTTGACCACTTATTCATCCATTGTGATTTTGCTTGGAAGGCTTGGAATTTCATTGCTAGGTT
GTTGTGGATCTCCTTCTGCCTCCCCAAAAAGATTGATGATTGGCTTTATGAAGGCCTTACGGCTTGGAACCTAAAACGGAAAGCCAAGGTGATTGCTAGTTGCGCCTTTA
GGGCCACTCTTTGGAGTCTATGGAAGGAAAGGAACACTAGAACGTTTGAAGATAAGTCCTACAACTTTGATTCTTTTTGTGATTGTGTAACAAAATACGGCCTCATGGTG
GATTTCTTTACACAAGAATTTTTTTTGTAA

mRNA sequence

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Protein sequence

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MGGLIGTSEQMEDCPQALAIIPPKNTETKLDQVDRRLVKSVWSSRHVAWQSLDASNSTGGILIIVMENLKRLKLYLREWNKDILSKEVCKKREILSRIDHIDRLEEQSNI
QNFEVEDRKCLKAKLMQLTVNEQRCLSQKSKIKWLREGDENTNLFHTWTTARKNRAFISILEDDTGNILSSKAEIENEILMVNSSKSAMIGIDVEMNELNNRAISFGYCW
NSGQQSWDLAFRRGLFDREITSWVALVEKLHNIHIGHDLDSVSWSLEESSMYSTKSLFYKLAKFSPKISSTTSNLIWKHNSPKKVKVFLWSLAYRSLNTDERLQIKFKQW
ALSPSACRLCVKDEENLDHLFIHCDFAWKAWNFIARLLWISFCLPKKIDDWLYEGLTAWNLKRKAKVIASCAFRATLWSLWKERNTRTFEDKSYNFDSFCDCVTKYGLMV
DFFTQEFFL

Spg006795 (gene) of Sponge gourd (cylindrica) v1 genome