CuGenDBv2

Gene ID	Spg006798
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Genome location	scaffold1:55706395..55708011
RNA-Seq Expression	Spg006798
Synteny	Spg006798
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4303756.1 unnamed protein product [Prunus armeniaca]

2.4e-09

32.85

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Query:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL
        S P+  SW  PP G  K+N D++W+A ++ GGVGW +RDS G  + +G +         ++EL AI   LS          N  +  I VESD+   + +
Subjt:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL

Query:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC
        + G     S+   +V+DI ++   +  +SFV  PR+C
Subjt:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC

CAB4313148.1 unnamed protein product [Prunus armeniaca]

4.1e-09

31.39

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Query:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL
        S P  +SW  PP G  K+N D++W+A ++ GGVGW +RDS G  + +G +         ++EL AI   LS       +        + VESD+   + +
Subjt:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL

Query:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC
        + G     S+   +V+DI ++   +  +SFV  PR+C
Subjt:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC

EEC72931.1 hypothetical protein OsI_06781 [Oryza sativa Indica Group]

5.3e-09

34.88

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Query:  WMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGEDED
        W+ P  G  KLNVD S++A   +GG+G  +RDSSG+ I++  K +N+       ELRA VEGL+++        +  + PI VE+D + VV+L+   + D
Subjt:  WMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGEDED

Query:  LSEASFLVYD----IAEMRKVVDGISFVH
         SE + +V++    +A  R+++  +S +H
Subjt:  LSEASFLVYD----IAEMRKVVDGISFVH

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]

1.1e-11

32.02

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Query:  YPPQFKLDIAMNLNLITSECLALRCTNL---GASLEVLASRRKSQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWP
        +P    + +A++  +I S   A R TNL     + ++   RR    +   W PP   SWKLN +++W A    GG+GW +RD  G  I +  + I     
Subjt:  YPPQFKLDIAMNLNLITSECLALRCTNL---GASLEVLASRRKSQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWP

Query:  VKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPR
        +  LE+ AI EGL      RA R   C  PI +ESD+L  + L+  + +D +E  +L+ +I +M K ++ +S  H  R
Subjt:  VKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]

4.8e-10

31.21

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Query:  LASRRKSQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDA
        L+   K+  +   W PPP   W LN D+SW+    RGG+GW +R   G  + +G + +     VK+LE  AI+EGL  L  +   R      P+ +E+D+
Subjt:  LASRRKSQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDA

Query:  LCVVKLMTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPR
          V  L+  + EDL++  ++V +I  +R   + ++F    R
Subjt:  LCVVKLMTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DNV9 uncharacterized protein LOC111022403

2.3e-10

31.21

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Query:  LASRRKSQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDA
        L+   K+  +   W PPP   W LN D+SW+    RGG+GW +R   G  + +G + +     VK+LE  AI+EGL  L  +   R      P+ +E+D+
Subjt:  LASRRKSQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDA

Query:  LCVVKLMTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPR
          V  L+  + EDL++  ++V +I  +R   + ++F    R
Subjt:  LCVVKLMTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPR

A0A6J5WPU6 Reverse transcriptase domain-containing protein

1.2e-09

32.85

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Query:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL
        S P+  SW  PP G  K+N D++W+A ++ GGVGW +RDS G  + +G +         ++EL AI   LS          N  +  I VESD+   + +
Subjt:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL

Query:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC
        + G     S+   +V+DI ++   +  +SFV  PR+C
Subjt:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC

A0A6J5XPQ2 RNase H domain-containing protein

2.0e-09

31.39

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Query:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL
        S P  +SW  PP G  K+N D++W+A ++ GGVGW +RDS G  + +G +         ++EL AI   LS       +        + VESD+   + +
Subjt:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL

Query:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC
        + G     S+   +V+DI ++   +  +SFV  PR+C
Subjt:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC

A0A6J5YDN0 Uncharacterized protein

4.4e-09

32.12

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Query:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL
        S P+  SW  PP G  K+N D++W+A ++ GGVGW +RDS    + +G +         ++EL AI   LS          N  +  I VESD+   + +
Subjt:  SQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKL

Query:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC
        + G     S+   +V+DI ++   +  +SFV  PR+C
Subjt:  MTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRAC

B8AFN2 RNase H domain-containing protein

2.6e-09

34.88

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Query:  WMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGEDED
        W+ P  G  KLNVD S++A   +GG+G  +RDSSG+ I++  K +N+       ELRA VEGL+++        +  + PI VE+D + VV+L+   + D
Subjt:  WMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGEDED

Query:  LSEASFLVYD----IAEMRKVVDGISFVH
         SE + +V++    +A  R+++  +S +H
Subjt:  LSEASFLVYD----IAEMRKVVDGISFVH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.3e-05

28.57

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Query:  WMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGED
        W  PP    K N D++W     R G+GW +R+ SG  ++ G + + +   V   EL A+   +  +      R       I  ESDA  +V L+  +D
Subjt:  WMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGED

AT4G29090.1 Ribonuclease H-like superfamily protein

2.2e-05

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Query:  WMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGEDED
        W PPP    K N D++WN    R G+GW +R+  G   + G + + K   V   EL A+   +  L   + +        +  ESD+  +++++   DE 
Subjt:  WMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESDALCVVKLMTGEDED

Query:  LSEASFLVYDIAEMRKVVDGISFVHCPR
               + D+  +      + FV  PR
Subjt:  LSEASFLVYDIAEMRKVVDGISFVHCPR

Sequences

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CDS sequence

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ATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATATGGGTCGGGCCATGTTGGCCCGACCCTTTGGTCCGGTCTTCCTCTGGGCGGTCTTTTGGTCCTACCTCTGCCCG
ATTGTCCTCGTCAGCTCCTTGTGTATCTGTGTGGAAATTCGAGGAGTCGACGGTGCACGCGATATGGGACTTGGCTGTCAAGGAACCTAAGCAGCGGGGATTTGGAGCTT
TCTATTCATCTGCTTTGGGGCATTTGGAAAAACAGAAACAATATCCTCCACAGTTCAAACTTGATATCGCAATGAATTTAAACCTCATCACTTCAGAATGCTTAGCTTTA
AGATGTACTAACCTGGGTGCATCTCTTGAGGTTCTTGCCAGTAGGAGGAAGAGCCAGCCGAGTCATAAATCCTGGATGCCCCCGCCAAAAGGTTCATGGAAATTAAATGT
CGACTCCTCCTGGAATGCGCTTCAGATCAGAGGAGGGGTGGGTTGGTCCATGCGTGACTCGTCGGGATCTCCAATCTACTCGGGCTTCAAACGGATCAACAAGAATTGGC
CAGTTAAGATTCTTGAATTGAGGGCGATCGTGGAAGGGCTGAGCGTCTTACCGGCAATCCGAGCTTCGCGGCCGAACCTTTGTATCCCTCCGATCACCGTTGAATCAGAC
GCTTTGTGCGTGGTAAAGCTCATGACTGGAGAAGATGAAGACCTGTCAGAAGCCTCATTCTTGGTTTATGATATTGCTGAGATGAGGAAGGTCGTGGATGGCATCTCTTT
TGTCCACTGCCCGCGCGCTTGTATGGTGATGCTCACCTGTTGGCGCGAATTGCAGCGTTCGGGGTTTTAG

mRNA sequence

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Protein sequence

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MVGLGKRPRPTIWVGPCWPDPLVRSSSGRSFGPTSARLSSSAPCVSVWKFEESTVHAIWDLAVKEPKQRGFGAFYSSALGHLEKQKQYPPQFKLDIAMNLNLITSECLAL
RCTNLGASLEVLASRRKSQPSHKSWMPPPKGSWKLNVDSSWNALQIRGGVGWSMRDSSGSPIYSGFKRINKNWPVKILELRAIVEGLSVLPAIRASRPNLCIPPITVESD
ALCVVKLMTGEDEDLSEASFLVYDIAEMRKVVDGISFVHCPRACMVMLTCWRELQRSGF

Spg006798 (gene) of Sponge gourd (cylindrica) v1 genome