; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006800 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006800
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed DNA polymerase
Genome locationscaffold1:55301188..55304505
RNA-Seq ExpressionSpg006800
SyntenySpg006800
Gene Ontology termsGO:0006261 - DNA-dependent DNA replication (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR002298 - DNA polymerase A
IPR002421 - 5'-3' exonuclease
IPR020046 - 5'-3' exonuclease, alpha-helical arch, N-terminal
IPR026960 - Reverse transcriptase zinc-binding domain
IPR029060 - PIN-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022933106.1 uncharacterized protein LOC111439872 isoform X1 [Cucurbita moschata]1.5e-4485.47Show/hide
Query:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT
        +GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQI+SPSLRLLRIAPRGFE ++ 
Subjt:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT

Query:  D-EMLQRKFGGWMLSPS
          E    K+G  +L PS
Subjt:  D-EMLQRKFGGWMLSPS

XP_038899891.1 DNA polymerase I isoform X1 [Benincasa hispida]8.6e-4585.47Show/hide
Query:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT
        +GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFE ++ 
Subjt:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT

Query:  D-EMLQRKFGGWMLSPS
          E    K+G  +L PS
Subjt:  D-EMLQRKFGGWMLSPS

XP_038899894.1 DNA polymerase I, thermostable isoform X3 [Benincasa hispida]8.6e-4585.47Show/hide
Query:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT
        +GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFE ++ 
Subjt:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT

Query:  D-EMLQRKFGGWMLSPS
          E    K+G  +L PS
Subjt:  D-EMLQRKFGGWMLSPS

XP_038899895.1 DNA polymerase I isoform X4 [Benincasa hispida]1.1e-4486.21Show/hide
Query:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD
        GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFE ++  
Subjt:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD

Query:  -EMLQRKFGGWMLSPS
         E    K+G  +L PS
Subjt:  -EMLQRKFGGWMLSPS

XP_038899897.1 DNA polymerase I isoform X6 [Benincasa hispida]1.1e-4486.21Show/hide
Query:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD
        GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFE ++  
Subjt:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD

Query:  -EMLQRKFGGWMLSPS
         E    K+G  +L PS
Subjt:  -EMLQRKFGGWMLSPS

TrEMBL top hitse value%identityAlignment
A0A6J1D5H7 DNA-directed DNA polymerase5.1e-4383.76Show/hide
Query:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT
        +GSTFRH  YPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVA GCKVRVVSPDKDFFQILSPSLRLLRIAPRGFE ++ 
Subjt:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT

Query:  D-EMLQRKFGGWMLSPS
          E    K+G   L PS
Subjt:  D-EMLQRKFGGWMLSPS

A0A6J1D7Q6 DNA-directed DNA polymerase5.1e-4384.48Show/hide
Query:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD
        GSTFRH  YPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVA GCKVRVVSPDKDFFQILSPSLRLLRIAPRGFE ++  
Subjt:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD

Query:  -EMLQRKFGGWMLSPS
         E    K+G   L PS
Subjt:  -EMLQRKFGGWMLSPS

A0A6J1EY78 DNA-directed DNA polymerase7.1e-4585.47Show/hide
Query:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT
        +GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQI+SPSLRLLRIAPRGFE ++ 
Subjt:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT

Query:  D-EMLQRKFGGWMLSPS
          E    K+G  +L PS
Subjt:  D-EMLQRKFGGWMLSPS

A0A6J1F3S3 DNA-directed DNA polymerase9.3e-4586.21Show/hide
Query:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD
        GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQI+SPSLRLLRIAPRGFE ++  
Subjt:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD

Query:  -EMLQRKFGGWMLSPS
         E    K+G  +L PS
Subjt:  -EMLQRKFGGWMLSPS

A0A6J1HVF9 DNA-directed DNA polymerase7.1e-4585.47Show/hide
Query:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT
        +GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQI+SPSLRLLRIAPRGFE ++ 
Subjt:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT

Query:  D-EMLQRKFGGWMLSPS
          E    K+G  +L PS
Subjt:  D-EMLQRKFGGWMLSPS

SwissProt top hitse value%identityAlignment
O52225 DNA polymerase I, thermostable2.2e-1440.57Show/hide
Query:  TFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTDEM
        +FRH  Y AYK+ R PTP+   + L  +K  +  + +  +E PG EADDV+GTLA ++   G +VR+++ D+DFFQ+LS  + +L   P G  +L T + 
Subjt:  TFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTDEM

Query:  LQRKFG
        +Q K+G
Subjt:  LQRKFG

P00582 DNA polymerase I5.3e-1343.18Show/hide
Query:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLL
        +G TFR   +  YKS+RPP PD +   ++ L A +K+M + ++ V GVEADDVIGTLA  +  AG  V + + DKD  Q+++P++ L+
Subjt:  QGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLL

P30313 DNA polymerase I, thermostable8.2e-1439.62Show/hide
Query:  TFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTDEM
        +FRH  Y AYK+ R PTP+   + L  +K  +  + +  +EVPG EADDV+ TLA R+   G +VR+++ D+D +Q+LS  + +L   P G+  L T   
Subjt:  TFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTDEM

Query:  LQRKFG
        L  K+G
Subjt:  LQRKFG

P52028 DNA polymerase I, thermostable5.3e-1338.68Show/hide
Query:  TFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTDEM
        +FRH  Y AYK+ R PTP+   + L  +K  +  +    +EVPG EADDV+ TLA ++   G +VR+++ D+D +Q++S  + +L   P G   L T E 
Subjt:  TFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTDEM

Query:  LQRKFG
        L  K+G
Subjt:  LQRKFG

Q55971 DNA polymerase I4.1e-1343.75Show/hide
Query:  TFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSP
        TFRH    AYKSNR  TP+   + L YL+  +++++++ I   G EADD++GTLA +   AG +V+++S D+D FQ++SP
Subjt:  TFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSP

Arabidopsis top hitse value%identityAlignment
AT3G52050.1 5'-3' exonuclease family protein2.3e-4377.88Show/hide
Query:  RTTQGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFES
        R+ +G  FRHT YPAYKSNRPPTPDTIVQGLQYLKASIK+MS+KVIEVPGVEADDVIGTLA+RS++AG KVRVVSPDKDFFQILSPSLRLLR+ PRG E 
Subjt:  RTTQGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFES

Query:  LNTD-EMLQRKFG
         +   E   +KFG
Subjt:  LNTD-EMLQRKFG

AT3G52050.2 5'-3' exonuclease family protein2.3e-4377.88Show/hide
Query:  RTTQGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFES
        R+ +G  FRHT YPAYKSNRPPTPDTIVQGLQYLKASIK+MS+KVIEVPGVEADDVIGTLA+RS++AG KVRVVSPDKDFFQILSPSLRLLR+ PRG E 
Subjt:  RTTQGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFES

Query:  LNTD-EMLQRKFG
         +   E   +KFG
Subjt:  LNTD-EMLQRKFG

AT3G52050.3 5'-3' exonuclease family protein2.3e-4377.88Show/hide
Query:  RTTQGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFES
        R+ +G  FRHT YPAYKSNRPPTPDTIVQGLQYLKASIK+MS+KVIEVPGVEADDVIGTLA+RS++AG KVRVVSPDKDFFQILSPSLRLLR+ PRG E 
Subjt:  RTTQGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFES

Query:  LNTD-EMLQRKFG
         +   E   +KFG
Subjt:  LNTD-EMLQRKFG

AT3G52050.4 5'-3' exonuclease family protein2.3e-4377.88Show/hide
Query:  RTTQGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFES
        R+ +G  FRHT YPAYKSNRPPTPDTIVQGLQYLKASIK+MS+KVIEVPGVEADDVIGTLA+RS++AG KVRVVSPDKDFFQILSPSLRLLR+ PRG E 
Subjt:  RTTQGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFES

Query:  LNTD-EMLQRKFG
         +   E   +KFG
Subjt:  LNTD-EMLQRKFG

AT3G52050.5 5'-3' exonuclease family protein1.1e-4279.82Show/hide
Query:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD
        G  FRHT YPAYKSNRPPTPDTIVQGLQYLKASIK+MS+KVIEVPGVEADDVIGTLA+RS++AG KVRVVSPDKDFFQILSPSLRLLR+ PRG E  +  
Subjt:  GSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNTD

Query:  -EMLQRKFG
         E   +KFG
Subjt:  -EMLQRKFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACGTCCGTCTTGGAGGAGGACCACCCAAGGATCCACTTTTCGTCATACACGTTACCCTGCATACAAGAGTAACAGGCCACCTACACCTGATACCATAGTCCAGGG
GCTCCAATACTTGAAGGCATCCATAAAGTCTATGTCCGTAAAGGTGATTGAGGTACCTGGAGTGGAAGCTGATGATGTAATTGGCACATTGGCTTTGAGAAGTGTTGCTG
CTGGCTGTAAGGTTCGCGTTGTCTCCCCTGACAAAGACTTCTTCCAGATTCTATCTCCTTCACTACGTCTTTTACGAATAGCTCCTCGTGGGTTTGAAAGTTTGAATACG
GATGAGATGCTGCAAAGAAAGTTTGGTGGCTGGATGCTCTCTCCTTCGGCCTGCAGGTTGTGCATTAAGGCAACAGAAACCTTGGATCATTTATTCCTTCATTGTGAGTT
TGCAGGGGCTGCTTGGAATTTTGTGGCCAATTTGCTGGGCATTTCGTTTTGCAAGCCAAAGAAGATTGAGGATTGGTTGTTAGAAGGCCTTAATGCTTGGAATCTAACAA
GAAAGGCTAAGATCTTGGCTAGTTGTGTGTTTCGGGCCACCATTTGGAATTTGTGGAAGGAAAGAAATGCTAGAACATTTGAGGACAAGTGTGGGGTGGAGCCTCCCAAG
TGGAGGTCTTCGATTATCATCACTGATGGAGAAGAAAGATCTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGACGTCCGTCTTGGAGGAGGACCACCCAAGGATCCACTTTTCGTCATACACGTTACCCTGCATACAAGAGTAACAGGCCACCTACACCTGATACCATAGTCCAGGG
GCTCCAATACTTGAAGGCATCCATAAAGTCTATGTCCGTAAAGGTGATTGAGGTACCTGGAGTGGAAGCTGATGATGTAATTGGCACATTGGCTTTGAGAAGTGTTGCTG
CTGGCTGTAAGGTTCGCGTTGTCTCCCCTGACAAAGACTTCTTCCAGATTCTATCTCCTTCACTACGTCTTTTACGAATAGCTCCTCGTGGGTTTGAAAGTTTGAATACG
GATGAGATGCTGCAAAGAAAGTTTGGTGGCTGGATGCTCTCTCCTTCGGCCTGCAGGTTGTGCATTAAGGCAACAGAAACCTTGGATCATTTATTCCTTCATTGTGAGTT
TGCAGGGGCTGCTTGGAATTTTGTGGCCAATTTGCTGGGCATTTCGTTTTGCAAGCCAAAGAAGATTGAGGATTGGTTGTTAGAAGGCCTTAATGCTTGGAATCTAACAA
GAAAGGCTAAGATCTTGGCTAGTTGTGTGTTTCGGGCCACCATTTGGAATTTGTGGAAGGAAAGAAATGCTAGAACATTTGAGGACAAGTGTGGGGTGGAGCCTCCCAAG
TGGAGGTCTTCGATTATCATCACTGATGGAGAAGAAAGATCTGGGTGA
Protein sequenceShow/hide protein sequence
MGRPSWRRTTQGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSMSVKVIEVPGVEADDVIGTLALRSVAAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFESLNT
DEMLQRKFGGWMLSPSACRLCIKATETLDHLFLHCEFAGAAWNFVANLLGISFCKPKKIEDWLLEGLNAWNLTRKAKILASCVFRATIWNLWKERNARTFEDKCGVEPPK
WRSSIIITDGEERSG