; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006805 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006805
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold1:55500286..55506556
RNA-Seq ExpressionSpg006805
SyntenySpg006805
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-3064.52Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EEENQC  ST AR SAF+RL +STSKK +P TS FD LK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTKGS
         K++S + SRMKRK SV INT+GS
Subjt:  KKLQSSILSRMKRKFSVLINTKGS

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-2960.58Show/hide
Query:  EKENLATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR  +FQR+SMA  EEENQC MST AR SAF+RL +STSKK +P TS FD LK+T+DQ +R+M 
Subjt:  EKENLATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSILSRMKRKFSVLINTKGS
        + + K F E N D K+ S + SRMKRK SV INT+GS
Subjt:  NLEVKLFDEVNSDKKLQSSILSRMKRKFSVLINTKGS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-3064.52Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S+FQR+SMA  EEENQC  ST AR SAF+RL +STSKK +P TS FD LK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTKGS
         K+ S + SRMKRK SV INT+GS
Subjt:  KKLQSSILSRMKRKFSVLINTKGS

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]1.4e-2959.12Show/hide
Query:  EKENLATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMD
        E +N   SY    EE+DNS + +Q+TS+FDRIKP TTR S+FQR+SMA  EEENQC  ST AR SAF+RL +STSKK +P TS FD LK+T+DQ +R+M 
Subjt:  EKENLATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSILSRMKRKFSVLINTKGS
        +L+ K F E N D K+ S + SRMKRK S+ INTKGS
Subjt:  NLEVKLFDEVNSDKKLQSSILSRMKRKFSVLINTKGS

TYK19591.1 hypothetical protein E5676_scaffold1274G00410 [Cucumis melo var. makuwa]4.8e-3060.48Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD
        +EVDNS K +QRTSVFDRIKP  TR  +FQR+SM   EEENQC MST  R SAF++L +STSKK QP T  F+CLK+T++Q +R+M +L+VK F E N+D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTKGS
         ++ S + SRMKRK SV+INTKG+
Subjt:  KKLQSSILSRMKRKFSVLINTKGS

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein1.8e-3064.52Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EEENQC  ST AR SAF+RL +STSKK +P TS FD LK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTKGS
         K++S + SRMKRK SV INT+GS
Subjt:  KKLQSSILSRMKRKFSVLINTKGS

A0A5A7SZJ7 Retrotransposon gag protein6.8e-3060.58Show/hide
Query:  EKENLATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR  +FQR+SMA  EEENQC MST AR SAF+RL +STSKK +P TS FD LK+T+DQ +R+M 
Subjt:  EKENLATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSILSRMKRKFSVLINTKGS
        + + K F E N D K+ S + SRMKRK SV INT+GS
Subjt:  NLEVKLFDEVNSDKKLQSSILSRMKRKFSVLINTKGS

A0A5A7TQ06 Retrotransposon gag protein1.8e-3064.52Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S+FQR+SMA  EEENQC  ST AR SAF+RL +STSKK +P TS FD LK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTKGS
         K+ S + SRMKRK SV INT+GS
Subjt:  KKLQSSILSRMKRKFSVLINTKGS

A0A5D3D5Q0 Gag protease polyprotein6.8e-3059.12Show/hide
Query:  EKENLATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMD
        E +N   SY    EE+DNS + +Q+TS+FDRIKP TTR S+FQR+SMA  EEENQC  ST AR SAF+RL +STSKK +P TS FD LK+T+DQ +R+M 
Subjt:  EKENLATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSILSRMKRKFSVLINTKGS
        +L+ K F E N D K+ S + SRMKRK S+ INTKGS
Subjt:  NLEVKLFDEVNSDKKLQSSILSRMKRKFSVLINTKGS

A0A5D3D7Q8 Uncharacterized protein2.3e-3060.48Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD
        +EVDNS K +QRTSVFDRIKP  TR  +FQR+SM   EEENQC MST  R SAF++L +STSKK QP T  F+CLK+T++Q +R+M +L+VK F E N+D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSILSRMKRKFSVLINTKGS
         ++ S + SRMKRK SV+INTKG+
Subjt:  KKLQSSILSRMKRKFSVLINTKGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACA
AAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCACTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCT
CCGCTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGTCAACCTTTGACATCTGTTTTTGATTGCCTCAAAGTAACAAGCGATCAACCTAAAAGA
AAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATAC
AAAAGGTTCTCACGCATTTCGCTGCAATTCATTCTCTCCAAATTTGAAGGTTCTCATGCGCTGCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCAA
TACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCAACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGAC
AAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTATCGTGACGAAGTGTTCGTTGAGGAGCATAG
TGCTGTGAAGAACGGTCTTCAACAATCCCACAACTACGTTCCTAATCTCAGAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAAT
CATCCGTTGAAGTATTCAGAGTCGTCAACGGAGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCACTACTTCGTTG
TTCCTTCTTCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGCTGTGCTACTTTCTTCTTTAAGTTC
GAAGGTTCTCGCACTTCGCTTTAGTTCCTTCTCCCAAATTCGAAGGTTTTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCA
GTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTTCAGTTCCTTCATCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGT
CCTCATGCTACGTTCGGTTGCGCTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCATGTCCTTGAACTCATGTTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAGCACG
TCATGTCCTTGAACTCATGCTGAAAGACGTGGCGGTGGCAAAAGTCCAAGGAGCACGTCATGTCCTTGAACTCATGCTGAAAGACGTGGTGGCGGCAAAAGTCCAAGGAG
CACGTCATGTCCTTGAACTCATGCTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAGCACGTCATGTCCTTGAACTCATGCTGAAAGATGTGGCGGCGACAAAAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACA
AAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCACTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCT
CCGCTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGTCAACCTTTGACATCTGTTTTTGATTGCCTCAAAGTAACAAGCGATCAACCTAAAAGA
AAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATAC
AAAAGGTTCTCACGCATTTCGCTGCAATTCATTCTCTCCAAATTTGAAGGTTCTCATGCGCTGCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCAA
TACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCAACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGAC
AAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTATCGTGACGAAGTGTTCGTTGAGGAGCATAG
TGCTGTGAAGAACGGTCTTCAACAATCCCACAACTACGTTCCTAATCTCAGAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAAT
CATCCGTTGAAGTATTCAGAGTCGTCAACGGAGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCACTACTTCGTTG
TTCCTTCTTCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGCTGTGCTACTTTCTTCTTTAAGTTC
GAAGGTTCTCGCACTTCGCTTTAGTTCCTTCTCCCAAATTCGAAGGTTTTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCA
GTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTTCAGTTCCTTCATCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGT
CCTCATGCTACGTTCGGTTGCGCTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCATGTCCTTGAACTCATGTTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAGCACG
TCATGTCCTTGAACTCATGCTGAAAGACGTGGCGGTGGCAAAAGTCCAAGGAGCACGTCATGTCCTTGAACTCATGCTGAAAGACGTGGTGGCGGCAAAAGTCCAAGGAG
CACGTCATGTCCTTGAACTCATGCTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAGCACGTCATGTCCTTGAACTCATGCTGAAAGATGTGGCGGCGACAAAAGTCTAA
Protein sequenceShow/hide protein sequence
MLNKSFSKTFHKKEKENLATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSLFQRMSMAATEEENQCSMSTSARPSAFQRLGVSTSKKSQPLTSVFDCLKVTSDQPKR
KMDNLEVKLFDEVNSDKKLQSSILSRMKRKFSVLINTKGSHAFRCNSFSPNLKVLMRCAAVPSPQVRRFSHTSIQFLLSKFEGSDAALLPSPTWVRVANTPTQYAFLFGD
KTEWEAGDMTTQEGIHSFPLLGEVDEYRDEVFVEEHSAVKNGLQQSHNYVPNLRVIAGKIKWWCSSLLQSNQESSVEVFRVVNGVRRFSRCTTSLFLLQVRRFSRCTTSL
FLLQVRRFSRYAASFSKFEGSHATLECVAVLLSSLSSKVLALRFSSFSQIRRFSRRFAAVPSSKFEGSHVLRCSSFLQVRRFSRASFQFLHPSSKVLTRFVAVPSSKFEG
PHATFGCAAALLPKVQRRHVLELMLKDVAAAKVQGARHVLELMLKDVAVAKVQGARHVLELMLKDVVAAKVQGARHVLELMLKDVAAAKVQGARHVLELMLKDVAATKV