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Spg006850 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006850
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionflowering time control protein FY
Genome locationscaffold10:39647704..39654328
RNA-Seq ExpressionSpg006850
SyntenySpg006850
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050227.1 flowering time control protein FY [Cucumis melo var. makuwa]3.4e-4588.07Show/hide
Query:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV
        MYGDPQQFQQQHQQ PNQHPLGGDF RGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHP G APPPYE     AHGDSFAAKRMRKLTQRRAVDYTSTV
Subjt:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV

Query:  VRYMQMRLY
        VR+MQ+R++
Subjt:  VRYMQMRLY
XP_004140291.2 flowering time control protein FY [Cucumis sativus]1.3e-4487.16Show/hide
Query:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV
        MYGDPQQFQQQHQQ PNQHPLGGDF RGPPPPGPPMMRQPSASSTTLAP+FQQHHHPRHP G APPPYE     AH DSFAAKRMRKLTQRRAVDYTSTV
Subjt:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV

Query:  VRYMQMRLY
        VRYMQ+R++
Subjt:  VRYMQMRLY
XP_008465965.1 PREDICTED: flowering time control protein FY [Cucumis melo]1.2e-4588.99Show/hide
Query:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV
        MYGDPQQFQQQHQQ PNQHPLGGDF RGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHP G APPPYE     AHGDSFAAKRMRKLTQRRAVDYTSTV
Subjt:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV

Query:  VRYMQMRLY
        VRYMQ+R++
Subjt:  VRYMQMRLY
XP_022146445.1 flowering time control protein FY [Momordica charantia]4.9e-4487.27Show/hide
Query:  MYGDPQQFQ--QQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTS
        MYGDPQQFQ  QQHQQQPNQHPLGGDF RGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHP G APPPY+     AHGD+FAAKRMRKLTQRRAVDYTS
Subjt:  MYGDPQQFQ--QQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTS

Query:  TVVRYMQMRL
        TVVRYMQ+R+
Subjt:  TVVRYMQMRL
XP_023550001.1 flowering time control protein FY-like isoform X1 [Cucurbita pepo subsp. pepo]7.8e-4287.16Show/hide
Query:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV
        MYGDPQQFQQQH QQPNQHPLGGDFPRGPPP GPPMMRQPSASSTTLAPEFQQHHHPRHP G A PPYE     AHGDSF AKRMRKLTQRRAVDYTSTV
Subjt:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV

Query:  VRYMQMRLY
        VRYMQ+R++
Subjt:  VRYMQMRLY
TrEMBL top hitse value%identityAlignment
A0A1S3CQ38 flowering time control protein FY5.7e-4688.99Show/hide
Query:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV
        MYGDPQQFQQQHQQ PNQHPLGGDF RGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHP G APPPYE     AHGDSFAAKRMRKLTQRRAVDYTSTV
Subjt:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV

Query:  VRYMQMRLY
        VRYMQ+R++
Subjt:  VRYMQMRLY
A0A5A7U778 Flowering time control protein FY1.6e-4588.07Show/hide
Query:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV
        MYGDPQQFQQQHQQ PNQHPLGGDF RGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHP G APPPYE     AHGDSFAAKRMRKLTQRRAVDYTSTV
Subjt:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV

Query:  VRYMQMRLY
        VR+MQ+R++
Subjt:  VRYMQMRLY
A0A6J1CX97 flowering time control protein FY2.4e-4487.27Show/hide
Query:  MYGDPQQFQ--QQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTS
        MYGDPQQFQ  QQHQQQPNQHPLGGDF RGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHP G APPPY+     AHGD+FAAKRMRKLTQRRAVDYTS
Subjt:  MYGDPQQFQ--QQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTS

Query:  TVVRYMQMRL
        TVVRYMQ+R+
Subjt:  TVVRYMQMRL
A0A6J1FFG6 flowering time control protein FY-like isoform X18.5e-4285.59Show/hide
Query:  MYGDPQQFQQQ--HQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTS
        MYGDPQQFQQQ   QQQPNQHPLGGDFPRGPPP GPPMMRQPSASSTTLAPEFQQHHHPRHP G  PPPYE     AHGDSF AKRMRKLTQRRAVDYTS
Subjt:  MYGDPQQFQQQ--HQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTS

Query:  TVVRYMQMRLY
        TVVRYMQ+R++
Subjt:  TVVRYMQMRLY
A0A6J1K3B2 flowering time control protein FY isoform X13.2e-4186.24Show/hide
Query:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV
        MYGDPQQFQQ  QQQPNQHPLGGDFPRGPPP GPPMMRQPSASSTTLAPEFQQHHHPRHP G A PPYE     AHGDSF AKRMRKLTQRRAVDYTSTV
Subjt:  MYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTV

Query:  VRYMQMRLY
        VRYMQ+R++
Subjt:  VRYMQMRLY
SwissProt top hitse value%identityAlignment
Q6NLV4 Flowering time control protein FY1.0e-1254.55Show/hide
Query:  GGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQMRLY
        GGD  RG   P PPMMRQ SASST + P++   HHP  P               + DSF AKRMRK TQRRAVDYTSTVVRY+Q R +
Subjt:  GGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQMRLY
Arabidopsis top hitse value%identityAlignment
AT5G13480.1 Transducin/WD40 repeat-like superfamily protein7.4e-1454.55Show/hide
Query:  GGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQMRLY
        GGD  RG   P PPMMRQ SASST + P++   HHP  P               + DSF AKRMRK TQRRAVDYTSTVVRY+Q R +
Subjt:  GGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQMRLY
AT5G13480.2 Transducin/WD40 repeat-like superfamily protein3.8e-1055.71Show/hide
Query:  MMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQ
        MMRQ SASST + P++   HHP  P               + DSF AKRMRK TQRRAVDYTSTVVRY+Q
Subjt:  MMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCGGATGGTTCCCTCATCTGCTTTGGGATGCATCGAATCGACAAAATATGATCAATCAAGAATTTGGAGGCAAAAAACTATTCTTGAAGGTTTAAAACAAATATT
CGATACCTGCAACCAGAATCAAATCCCCATTGAAGTTGAATTCGACGCCCTGGAAGCCGTGAACAACTTGGTCGAAACTTCGGAGGATCTTTCTGATGTGAAGCTTATCA
CTGATGAGATAAGTGCATTAGCTTCGAGATCTTTTGTCATGGAATCTCACCATTGTAGTAGTTGTGTTTTGAACACAGTTGTGCAATGTGTTGCGAGGGAAGCCACAAAT
TTTCTTTTTGATTCTGGTCTATACCAGAATGGGTCTTCTTCGCGGGAAAGGAGATGTTATCTTTGTCCTCTTGGTACTCTCAAGTTCAGTTTCAGCATCTACAACATGTA
CGGCGATCCTCAACAGTTTCAGCAGCAGCACCAGCAGCAGCCCAATCAGCATCCTCTTGGTGGGGATTTCCCTAGAGGCCCGCCCCCGCCAGGGCCGCCCATGATGAGGC
AGCCATCTGCTTCTTCAACTACACTTGCTCCGGAGTTTCAACAGCACCATCATCCTCGCCATCCCCCTGGCACTGCTCCTCCTCCTTATGAAGATATATTTGTTGCAGCC
CATGGGGACAGTTTTGCTGCAAAAAGAATGAGAAAGCTTACTCAAAGGAGGGCAGTTGATTATACTAGTACTGTGGTGCGATACATGCAGATGAGACTATATGCCATAGT
GTTATGCAGGCACTATGCCATTAAGGATCAGGGTGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCGGATGGTTCCCTCATCTGCTTTGGGATGCATCGAATCGACAAAATATGATCAATCAAGAATTTGGAGGCAAAAAACTATTCTTGAAGGTTTAAAACAAATATT
CGATACCTGCAACCAGAATCAAATCCCCATTGAAGTTGAATTCGACGCCCTGGAAGCCGTGAACAACTTGGTCGAAACTTCGGAGGATCTTTCTGATGTGAAGCTTATCA
CTGATGAGATAAGTGCATTAGCTTCGAGATCTTTTGTCATGGAATCTCACCATTGTAGTAGTTGTGTTTTGAACACAGTTGTGCAATGTGTTGCGAGGGAAGCCACAAAT
TTTCTTTTTGATTCTGGTCTATACCAGAATGGGTCTTCTTCGCGGGAAAGGAGATGTTATCTTTGTCCTCTTGGTACTCTCAAGTTCAGTTTCAGCATCTACAACATGTA
CGGCGATCCTCAACAGTTTCAGCAGCAGCACCAGCAGCAGCCCAATCAGCATCCTCTTGGTGGGGATTTCCCTAGAGGCCCGCCCCCGCCAGGGCCGCCCATGATGAGGC
AGCCATCTGCTTCTTCAACTACACTTGCTCCGGAGTTTCAACAGCACCATCATCCTCGCCATCCCCCTGGCACTGCTCCTCCTCCTTATGAAGATATATTTGTTGCAGCC
CATGGGGACAGTTTTGCTGCAAAAAGAATGAGAAAGCTTACTCAAAGGAGGGCAGTTGATTATACTAGTACTGTGGTGCGATACATGCAGATGAGACTATATGCCATAGT
GTTATGCAGGCACTATGCCATTAAGGATCAGGGTGGGTAG
Protein sequenceShow/hide protein sequence
MTRMVPSSALGCIESTKYDQSRIWRQKTILEGLKQIFDTCNQNQIPIEVEFDALEAVNNLVETSEDLSDVKLITDEISALASRSFVMESHHCSSCVLNTVVQCVAREATN
FLFDSGLYQNGSSSRERRCYLCPLGTLKFSFSIYNMYGDPQQFQQQHQQQPNQHPLGGDFPRGPPPPGPPMMRQPSASSTTLAPEFQQHHHPRHPPGTAPPPYEDIFVAA
HGDSFAAKRMRKLTQRRAVDYTSTVVRYMQMRLYAIVLCRHYAIKDQGG