; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006870 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006870
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold10:39562572..39564336
RNA-Seq ExpressionSpg006870
SyntenySpg006870
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-1637.1Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF
        F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    K LL   S P  ++S     
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF

Query:  FAIKPTSQHQLLFQNIVVASLWSL
         ++   +Q  L+  N     LW +
Subjt:  FAIKPTSQHQLLFQNIVVASLWSL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-1737.1Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF
        F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    + LL   S P  ++S     
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF

Query:  FAIKPTSQHQLLFQNIVVASLWSL
         ++   +Q  L+  N +   LW +
Subjt:  FAIKPTSQHQLLFQNIVVASLWSL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-1737.1Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF
        F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    + LL   S P  ++S     
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF

Query:  FAIKPTSQHQLLFQNIVVASLWSL
         ++   +Q  L+  N +   LW +
Subjt:  FAIKPTSQHQLLFQNIVVASLWSL

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.2e-1733.33Show/hide
Query:  ESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSFCLEFFAIK
        E  LK+LW++  P+KCKFF+WT++H++LNT D +Q++    +LNPS C+ C++ +E ++H+F+ C F+  +WN   S  G   +    ++  CL+     
Subjt:  ESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSFCLEFFAIK

Query:  PTSQHQLLFQNIVVASLWSL
          +   ++  N  +A+LW++
Subjt:  PTSQHQLLFQNIVVASLWSL

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]3.7e-1840.68Show/hide
Query:  VLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSFCLEFFAIKPT
        +  NLWK++ P++CKFF+WTLLH  +NT D+LQR+L    L PS C+LCKA  E   H F HC FS  +  K+  + G     P    + C + F  K  
Subjt:  VLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSFCLEFFAIKPT

Query:  SQHQLLFQNIVVASLWSL
        ++ Q + Q +V A+LW++
Subjt:  SQHQLLFQNIVVASLWSL

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein9.9e-1737.1Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF
        F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    K LL   S P  ++S     
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF

Query:  FAIKPTSQHQLLFQNIVVASLWSL
         ++   +Q  L+  N     LW +
Subjt:  FAIKPTSQHQLLFQNIVVASLWSL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.5e-1737.1Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF
        F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    + LL   S P  ++S     
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF

Query:  FAIKPTSQHQLLFQNIVVASLWSL
         ++   +Q  L+  N +   LW +
Subjt:  FAIKPTSQHQLLFQNIVVASLWSL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.5e-1737.1Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF
        F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    + LL   S P  ++S     
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSFCLEF

Query:  FAIKPTSQHQLLFQNIVVASLWSL
         ++   +Q  L+  N +   LW +
Subjt:  FAIKPTSQHQLLFQNIVVASLWSL

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein1.3e-1633.33Show/hide
Query:  ESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSFCLEFFAIK
        E  LK+LW++  P+KCKFF+WT++H++LNT D +Q++    +LNPS C+ C++ +E ++H+F+ C F+  +WN   S  G        ++  CL+     
Subjt:  ESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSFCLEFFAIK

Query:  PTSQHQLLFQNIVVASLWSL
          +   ++  N  +A+LW++
Subjt:  PTSQHQLLFQNIVVASLWSL

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein4.5e-1733.33Show/hide
Query:  ESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSFCLEFFAIK
        E  LK+LW++  P+KCKFF+WT++H++LNT D +Q++    +LNPS C+ C++ +E ++H+F+ C F+  +WN   S  G   +    ++  CL+     
Subjt:  ESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSFCLEFFAIK

Query:  PTSQHQLLFQNIVVASLWSL
          +   ++  N  +A+LW++
Subjt:  PTSQHQLLFQNIVVASLWSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGTATTACGAGATGTAAGGAGTCGACGAAGACAACGCAACACCAACCCAAAGACACGACCAGGAAGCGGACCCAGAGGAGAAGTAGGCCAAAAGGAATTGGGCC
AAGGCCTAATACCTTGGTCTGGTCGGCCCGCTTCGGCGGTTCCGGCCCTCTCTCCTTTGCTCGGTCCCTAGTGTTCTGGTCCAGTCCGATCCCTAGAAACCATAGGACAG
GAAAAGTTATTCAAACGATGAAGAACGAAAGGAAAAATGGCGATTCACTCTCACAGAAGCAATGCACGAAGAATAGAGAAGAAGAAGAAGAACAGAATGCACCAGATGTA
AGTGGTTCGGCAACGAGGCCTACGTCCACTGGAAGGGAGGTAATTCTCCGTACACAAACCCTTCTTCATCACGAAAGAAATTCTATTTTCTACTCTCTCTCCTCTGACTC
TATTGCTCTCCCTTCTGTGGTGATTTACCGTTGGTGGCATCAGGCTTTCCCGGAGTCGGTGCTGAAAAATCTTTGGAAAGCATCCTTCCCTAGAAAATGCAAATTTTTCC
TCTGGACTCTTCTTCACAGGAGACTTAATACGGCTGACCTCCTTCAAAGAAAGCTCAAACCTTCGGCTTTAAATCCCAGCAGATGTGTTCTTTGCAAAGCCCAATCTGAG
TCGTTAGATCATATTTTCCTTCATTGTCACTTCTCAGCTGTTATTTGGAACAAGCTTTTCAGTGTTAAGGGTCTCCTCTTCTCTCGTCCTCAACAGATTCGGTCCTTCTG
CTTGGAATTTTTTGCCATTAAACCGACATCTCAGCATCAGCTTCTCTTCCAGAATATTGTGGTGGCTTCTTTATGGTCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGTATTACGAGATGTAAGGAGTCGACGAAGACAACGCAACACCAACCCAAAGACACGACCAGGAAGCGGACCCAGAGGAGAAGTAGGCCAAAAGGAATTGGGCC
AAGGCCTAATACCTTGGTCTGGTCGGCCCGCTTCGGCGGTTCCGGCCCTCTCTCCTTTGCTCGGTCCCTAGTGTTCTGGTCCAGTCCGATCCCTAGAAACCATAGGACAG
GAAAAGTTATTCAAACGATGAAGAACGAAAGGAAAAATGGCGATTCACTCTCACAGAAGCAATGCACGAAGAATAGAGAAGAAGAAGAAGAACAGAATGCACCAGATGTA
AGTGGTTCGGCAACGAGGCCTACGTCCACTGGAAGGGAGGTAATTCTCCGTACACAAACCCTTCTTCATCACGAAAGAAATTCTATTTTCTACTCTCTCTCCTCTGACTC
TATTGCTCTCCCTTCTGTGGTGATTTACCGTTGGTGGCATCAGGCTTTCCCGGAGTCGGTGCTGAAAAATCTTTGGAAAGCATCCTTCCCTAGAAAATGCAAATTTTTCC
TCTGGACTCTTCTTCACAGGAGACTTAATACGGCTGACCTCCTTCAAAGAAAGCTCAAACCTTCGGCTTTAAATCCCAGCAGATGTGTTCTTTGCAAAGCCCAATCTGAG
TCGTTAGATCATATTTTCCTTCATTGTCACTTCTCAGCTGTTATTTGGAACAAGCTTTTCAGTGTTAAGGGTCTCCTCTTCTCTCGTCCTCAACAGATTCGGTCCTTCTG
CTTGGAATTTTTTGCCATTAAACCGACATCTCAGCATCAGCTTCTCTTCCAGAATATTGTGGTGGCTTCTTTATGGTCTCTTTGA
Protein sequenceShow/hide protein sequence
MEGITRCKESTKTTQHQPKDTTRKRTQRRSRPKGIGPRPNTLVWSARFGGSGPLSFARSLVFWSSPIPRNHRTGKVIQTMKNERKNGDSLSQKQCTKNREEEEEQNAPDV
SGSATRPTSTGREVILRTQTLLHHERNSIFYSLSSDSIALPSVVIYRWWHQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSE
SLDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSFCLEFFAIKPTSQHQLLFQNIVVASLWSL